Hb_006700_040

Information

Type -
Description -
Location Contig6700: 51009-56948
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15400g
description POPTRDRAFT_830898; vacuolar sorting receptor family protein
nr
ID XP_012065972.1
description PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
swissprot
ID Q9FYH7
description Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3
trembl
ID A0A067L3Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26665 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53404: 54599-55584 , PASA_asmbl_53405: 55645-57027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006700_040 0.0 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
2 Hb_011853_010 0.1143388226 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
3 Hb_001040_150 0.1450208682 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033594_100 0.1524328472 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_126398_020 0.1628897773 - - conserved hypothetical protein [Ricinus communis]
6 Hb_152868_030 0.1644210523 - - abhydrolase domain containing, putative [Ricinus communis]
7 Hb_000656_200 0.1646037493 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
8 Hb_000227_330 0.1699281549 - - Acyl-CoA synthetase [Ricinus communis]
9 Hb_002291_020 0.1708780419 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000032_600 0.1741701543 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_004657_060 0.1761217982 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_012760_110 0.1783733194 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
13 Hb_000453_240 0.1788334957 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
14 Hb_006185_030 0.179698324 - - threonine synthase, putative [Ricinus communis]
15 Hb_101449_010 0.1798199706 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
16 Hb_012404_080 0.1816931373 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
17 Hb_000070_110 0.1821939847 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
18 Hb_002232_160 0.1822918631 - - Transaminase mtnE, putative [Ricinus communis]
19 Hb_000574_250 0.1843011755 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_000922_260 0.1846008135 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006700_040 Hb_006700_040 Hb_011853_010 Hb_011853_010 Hb_006700_040--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_006700_040--Hb_001040_150 Hb_033594_100 Hb_033594_100 Hb_006700_040--Hb_033594_100 Hb_126398_020 Hb_126398_020 Hb_006700_040--Hb_126398_020 Hb_152868_030 Hb_152868_030 Hb_006700_040--Hb_152868_030 Hb_000656_200 Hb_000656_200 Hb_006700_040--Hb_000656_200 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_033594_100--Hb_011853_010 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_082683_010 Hb_082683_010 Hb_033594_100--Hb_082683_010 Hb_053929_010 Hb_053929_010 Hb_126398_020--Hb_053929_010 Hb_000327_070 Hb_000327_070 Hb_126398_020--Hb_000327_070 Hb_126398_020--Hb_000656_200 Hb_126398_020--Hb_152868_030 Hb_002232_160 Hb_002232_160 Hb_126398_020--Hb_002232_160 Hb_027380_190 Hb_027380_190 Hb_152868_030--Hb_027380_190 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_152868_030--Hb_000465_150 Hb_011633_040 Hb_011633_040 Hb_152868_030--Hb_011633_040 Hb_000656_200--Hb_053929_010 Hb_000656_200--Hb_033594_100 Hb_008494_090 Hb_008494_090 Hb_000656_200--Hb_008494_090 Hb_067664_010 Hb_067664_010 Hb_000656_200--Hb_067664_010 Hb_000365_220 Hb_000365_220 Hb_000656_200--Hb_000365_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.577438 5.57282 3.52599 3.64165 0.312638 0.368818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31221 1.27524 2.71125 11.8879 11.5478

CAGE analysis