Hb_006711_040

Information

Type -
Description -
Location Contig6711: 27802-29596
Sequence    

Annotation

kegg
ID rcu:RCOM_1052250
description hypothetical protein
nr
ID XP_012076714.1
description PREDICTED: probable protein ABIL5 [Jatropha curcas]
swissprot
ID Q5JMF2
description Probable protein ABIL5 OS=Oryza sativa subsp. japonica GN=Os01g0760900 PE=2 SV=1
trembl
ID A0A067KN41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07261 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53441: 27756-29518 , PASA_asmbl_53442: 28152-29578
cDNA
(Sanger)
(ID:Location)		 003_D02.ab1: 28152-29578 , 022_B12.ab1: 29176-29578 , 052_C19.ab1: 28790-29518

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_040 0.0 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
2 Hb_000343_220 0.0912370326 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
3 Hb_000490_040 0.0975834501 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
4 Hb_008143_060 0.099341318 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
5 Hb_001252_050 0.1066382697 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
6 Hb_001832_140 0.1088053009 - - endomembrane protein 70 family protein [Medicago truncatula]
7 Hb_000272_010 0.1100176752 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
8 Hb_000696_250 0.1144731658 - - PREDICTED: patellin-6 [Jatropha curcas]
9 Hb_000417_140 0.1155506506 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
10 Hb_001195_740 0.1183258936 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
11 Hb_004846_080 0.120086376 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
12 Hb_000535_040 0.1267131845 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
13 Hb_009535_010 0.1280262596 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
14 Hb_080147_070 0.1401710864 - - Rop5 [Hevea brasiliensis]
15 Hb_000260_670 0.1437847521 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
16 Hb_000359_180 0.148548035 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007382_080 0.1485878204 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_002217_060 0.1486646272 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
19 Hb_001366_380 0.1525988846 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
20 Hb_002918_120 0.152633576 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006711_040 Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_006711_040--Hb_000343_220 Hb_000490_040 Hb_000490_040 Hb_006711_040--Hb_000490_040 Hb_008143_060 Hb_008143_060 Hb_006711_040--Hb_008143_060 Hb_001252_050 Hb_001252_050 Hb_006711_040--Hb_001252_050 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140 Hb_000272_010 Hb_000272_010 Hb_006711_040--Hb_000272_010 Hb_000343_220--Hb_001252_050 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000343_220--Hb_000490_040 Hb_000343_220--Hb_000272_010 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_002276_250 Hb_002276_250 Hb_000490_040--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_000490_040--Hb_004357_030 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_001195_740 Hb_001195_740 Hb_008143_060--Hb_001195_740 Hb_008143_060--Hb_001832_140 Hb_008143_060--Hb_001252_050 Hb_000696_250 Hb_000696_250 Hb_008143_060--Hb_000696_250 Hb_000465_130 Hb_000465_130 Hb_008143_060--Hb_000465_130 Hb_008143_050 Hb_008143_050 Hb_001252_050--Hb_008143_050 Hb_001252_050--Hb_000696_250 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140 Hb_001832_140--Hb_000696_250 Hb_001832_140--Hb_001195_740 Hb_001832_140--Hb_001252_050 Hb_001832_140--Hb_000465_130 Hb_001366_380 Hb_001366_380 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000272_010--Hb_000535_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115974 0.559642 9.67459 7.28424 0.101606 0.0645872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0700587 6.92533 1.79132

CAGE analysis