Hb_006711_050

Information

Type -
Description -
Location Contig6711: 40061-40857
Sequence    

Annotation

kegg
ID vvi:100254415
description putative germin-like protein 2-2
nr
ID XP_012088600.1
description PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
swissprot
ID Q6K5Q0
description Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1
trembl
ID A0A067JJ15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_050 0.0 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
2 Hb_012702_030 0.0186613055 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
3 Hb_000329_640 0.0711069344 - - -
4 Hb_003673_030 0.0911693653 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
5 Hb_029475_010 0.0986372911 - - conserved hypothetical protein [Ricinus communis]
6 Hb_178817_010 0.1181744212 - - protease [Gossypium hirsutum]
7 Hb_030399_010 0.1342535192 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
8 Hb_001140_340 0.142059758 - - -
9 Hb_031862_260 0.1704081702 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003947_010 0.249265954 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
11 Hb_011113_020 0.2886223804 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
12 Hb_027506_050 0.2907751502 - - -
13 Hb_000521_310 0.2978622414 - - -
14 Hb_018616_030 0.3090512424 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
15 Hb_002417_030 0.31113351 - - PREDICTED: purine permease 3-like [Jatropha curcas]
16 Hb_001250_110 0.3215134754 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
17 Hb_012753_080 0.3225075076 - - -
18 Hb_005269_010 0.3268814561 - - -
19 Hb_002269_010 0.3285295409 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
20 Hb_001703_100 0.3292241736 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_006711_050 Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_006711_050--Hb_012702_030 Hb_000329_640 Hb_000329_640 Hb_006711_050--Hb_000329_640 Hb_003673_030 Hb_003673_030 Hb_006711_050--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_006711_050--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_006711_050--Hb_178817_010 Hb_030399_010 Hb_030399_010 Hb_006711_050--Hb_030399_010 Hb_012702_030--Hb_000329_640 Hb_012702_030--Hb_003673_030 Hb_012702_030--Hb_029475_010 Hb_012702_030--Hb_030399_010 Hb_012702_030--Hb_178817_010 Hb_000329_640--Hb_030399_010 Hb_000329_640--Hb_029475_010 Hb_001140_340 Hb_001140_340 Hb_000329_640--Hb_001140_340 Hb_000329_640--Hb_003673_030 Hb_003673_030--Hb_178817_010 Hb_003673_030--Hb_029475_010 Hb_003673_030--Hb_001140_340 Hb_029475_010--Hb_001140_340 Hb_029475_010--Hb_178817_010 Hb_178817_010--Hb_001140_340 Hb_011113_020 Hb_011113_020 Hb_178817_010--Hb_011113_020 Hb_031862_260 Hb_031862_260 Hb_030399_010--Hb_031862_260 Hb_030399_010--Hb_003673_030 Hb_030399_010--Hb_029475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0487899 0.100352 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0368109 0

CAGE analysis