Hb_006711_060

Information

Type -
Description -
Location Contig6711: 50362-54685
Sequence    

Annotation

kegg
ID cam:101504198
description tubulin beta-3 chain-like
nr
ID XP_010098541.1
description Tubulin beta-1 chain [Morus notabilis]
swissprot
ID Q6VAF7
description Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1
trembl
ID W9R7I4
description Tubulin beta-1 chain OS=Morus notabilis GN=L484_025981 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53443: 50842-54422
cDNA
(Sanger)
(ID:Location)		 052_M19.ab1: 51679-54197

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_060 0.0 - - Tubulin beta-1 chain [Morus notabilis]
2 Hb_003540_030 0.0854717703 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
3 Hb_031862_110 0.0876556082 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_000120_960 0.0903879697 - - isocitrate dehydrogenase, putative [Ricinus communis]
5 Hb_001014_040 0.091438338 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
6 Hb_007904_260 0.0919084303 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
7 Hb_004738_040 0.0927624293 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
8 Hb_000138_110 0.100011902 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
9 Hb_000140_050 0.1016427784 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
10 Hb_004079_030 0.1046082581 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
11 Hb_000092_010 0.10462968 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
12 Hb_004324_070 0.1065498238 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_001545_100 0.1076966587 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
14 Hb_000046_320 0.1090941097 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_000130_050 0.1092752739 - - 14-3-3 protein, putative [Ricinus communis]
16 Hb_000638_250 0.1099186257 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000431_010 0.1111886794 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
18 Hb_000567_120 0.1139931437 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
19 Hb_000108_070 0.1149994783 - - alpha-tubulin 1 [Hevea brasiliensis]
20 Hb_050514_010 0.1151930715 - - hypothetical protein 29 [Hevea brasiliensis]

Gene co-expression network

sample Hb_006711_060 Hb_006711_060 Hb_003540_030 Hb_003540_030 Hb_006711_060--Hb_003540_030 Hb_031862_110 Hb_031862_110 Hb_006711_060--Hb_031862_110 Hb_000120_960 Hb_000120_960 Hb_006711_060--Hb_000120_960 Hb_001014_040 Hb_001014_040 Hb_006711_060--Hb_001014_040 Hb_007904_260 Hb_007904_260 Hb_006711_060--Hb_007904_260 Hb_004738_040 Hb_004738_040 Hb_006711_060--Hb_004738_040 Hb_000140_050 Hb_000140_050 Hb_003540_030--Hb_000140_050 Hb_001545_100 Hb_001545_100 Hb_003540_030--Hb_001545_100 Hb_003540_030--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_031862_110--Hb_001014_040 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_002687_110 Hb_002687_110 Hb_004738_040--Hb_002687_110 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_001277_330 Hb_001277_330 Hb_004738_040--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_004738_040--Hb_005625_020 Hb_000409_020 Hb_000409_020 Hb_004738_040--Hb_000409_020 Hb_004738_040--Hb_000431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.614 20.0531 39.3089 42.9397 29.2177 46.8585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5387 70.272 129.369 24.2677 26.3125

CAGE analysis