Hb_006717_020

Information

Type -
Description -
Location Contig6717: 20135-21173
Sequence    

Annotation

kegg
ID rcu:RCOM_0904730
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AIO04122.1
description calcium-dependent protein kinase [Hevea brasiliensis]
swissprot
ID Q9ZSA2
description Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1
trembl
ID A0A088S5C2
description Calcium-dependent protein kinase OS=Hevea brasiliensis GN=CDPK PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006717_020 0.0 - - calcium-dependent protein kinase [Hevea brasiliensis]
2 Hb_000892_040 0.1670288864 - - -
3 Hb_004108_200 0.1673103955 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
4 Hb_002218_060 0.1685224839 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001031_020 0.170415423 - - hypothetical protein VITISV_000631 [Vitis vinifera]
6 Hb_001821_070 0.1808734692 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
7 Hb_080873_010 0.1810397417 - - -
8 Hb_003867_030 0.183050592 - - -
9 Hb_030873_010 0.1842573886 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
10 Hb_028487_080 0.1904209299 - - Pectinesterase-1 precursor, putative [Ricinus communis]
11 Hb_000522_020 0.1929409841 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
12 Hb_015473_020 0.2019422193 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
13 Hb_007590_040 0.2029822657 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
14 Hb_004162_030 0.2030263232 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
15 Hb_000501_180 0.2037850836 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
16 Hb_005474_050 0.2079072094 - - putative leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
17 Hb_000119_050 0.2098247646 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
18 Hb_091913_010 0.2145467161 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
19 Hb_000286_180 0.214590573 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
20 Hb_000392_510 0.2153155798 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_006717_020 Hb_006717_020 Hb_000892_040 Hb_000892_040 Hb_006717_020--Hb_000892_040 Hb_004108_200 Hb_004108_200 Hb_006717_020--Hb_004108_200 Hb_002218_060 Hb_002218_060 Hb_006717_020--Hb_002218_060 Hb_001031_020 Hb_001031_020 Hb_006717_020--Hb_001031_020 Hb_001821_070 Hb_001821_070 Hb_006717_020--Hb_001821_070 Hb_080873_010 Hb_080873_010 Hb_006717_020--Hb_080873_010 Hb_000892_040--Hb_080873_010 Hb_000501_180 Hb_000501_180 Hb_000892_040--Hb_000501_180 Hb_002284_040 Hb_002284_040 Hb_000892_040--Hb_002284_040 Hb_002092_140 Hb_002092_140 Hb_000892_040--Hb_002092_140 Hb_007590_040 Hb_007590_040 Hb_000892_040--Hb_007590_040 Hb_166828_010 Hb_166828_010 Hb_000892_040--Hb_166828_010 Hb_004162_030 Hb_004162_030 Hb_004108_200--Hb_004162_030 Hb_004108_200--Hb_001031_020 Hb_000635_170 Hb_000635_170 Hb_004108_200--Hb_000635_170 Hb_000045_110 Hb_000045_110 Hb_004108_200--Hb_000045_110 Hb_008931_020 Hb_008931_020 Hb_004108_200--Hb_008931_020 Hb_000029_180 Hb_000029_180 Hb_002218_060--Hb_000029_180 Hb_000117_110 Hb_000117_110 Hb_002218_060--Hb_000117_110 Hb_001677_130 Hb_001677_130 Hb_002218_060--Hb_001677_130 Hb_003867_030 Hb_003867_030 Hb_002218_060--Hb_003867_030 Hb_000398_200 Hb_000398_200 Hb_002218_060--Hb_000398_200 Hb_030370_070 Hb_030370_070 Hb_002218_060--Hb_030370_070 Hb_000563_380 Hb_000563_380 Hb_001031_020--Hb_000563_380 Hb_028487_080 Hb_028487_080 Hb_001031_020--Hb_028487_080 Hb_001031_020--Hb_008931_020 Hb_001031_020--Hb_000635_170 Hb_001031_020--Hb_004162_030 Hb_000846_020 Hb_000846_020 Hb_001821_070--Hb_000846_020 Hb_015473_020 Hb_015473_020 Hb_001821_070--Hb_015473_020 Hb_001821_070--Hb_028487_080 Hb_005529_050 Hb_005529_050 Hb_001821_070--Hb_005529_050 Hb_000876_060 Hb_000876_060 Hb_001821_070--Hb_000876_060 Hb_001821_070--Hb_000501_180 Hb_080873_010--Hb_002092_140 Hb_080873_010--Hb_166828_010 Hb_000002_280 Hb_000002_280 Hb_080873_010--Hb_000002_280 Hb_080873_010--Hb_002284_040 Hb_080873_010--Hb_000501_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.00053 0 0.0680768 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.188052

CAGE analysis