Hb_006717_070

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig6717: 53760-54902
Sequence    

Annotation

kegg
ID rcu:RCOM_0904590
description triptychon and cpc, putative
nr
ID XP_012091344.1
description PREDICTED: transcription factor CPC-like [Jatropha curcas]
swissprot
ID O22059
description Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1
trembl
ID A0A067JAH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21218 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53459: 53781-54500 , PASA_asmbl_53460: 53781-54523 , PASA_asmbl_53461: 54399-54689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006717_070 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
2 Hb_127886_010 0.1076630309 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_009732_020 0.1108213664 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
4 Hb_003626_040 0.112040133 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
5 Hb_000395_220 0.1137479354 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_000362_110 0.1234403828 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
7 Hb_003813_120 0.1342972771 - - zinc finger protein, putative [Ricinus communis]
8 Hb_005180_010 0.1352014201 - - cyclophilin [Hevea brasiliensis]
9 Hb_000702_060 0.1367850661 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033772_070 0.1375789699 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
11 Hb_000227_040 0.1376999438 - - Stem-specific protein TSJT1, putative [Ricinus communis]
12 Hb_004129_050 0.1393854619 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
13 Hb_001780_150 0.1398156828 - - ceramidase, putative [Ricinus communis]
14 Hb_005489_140 0.141970996 - - PREDICTED: maspardin [Jatropha curcas]
15 Hb_003626_050 0.1452562329 - - malic enzyme, putative [Ricinus communis]
16 Hb_001799_190 0.1458462035 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
17 Hb_007426_140 0.1478893298 - - ornithine aminotransferase, putative [Ricinus communis]
18 Hb_000347_110 0.1485649058 - - BnaA05g25330D [Brassica napus]
19 Hb_001500_070 0.1517546211 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008053_060 0.1524977425 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006717_070 Hb_006717_070 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_009732_020 Hb_009732_020 Hb_006717_070--Hb_009732_020 Hb_003626_040 Hb_003626_040 Hb_006717_070--Hb_003626_040 Hb_000395_220 Hb_000395_220 Hb_006717_070--Hb_000395_220 Hb_000362_110 Hb_000362_110 Hb_006717_070--Hb_000362_110 Hb_003813_120 Hb_003813_120 Hb_006717_070--Hb_003813_120 Hb_000645_210 Hb_000645_210 Hb_127886_010--Hb_000645_210 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010 Hb_009732_020--Hb_000395_220 Hb_009732_020--Hb_000227_040 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_005333_050 Hb_005333_050 Hb_009732_020--Hb_005333_050 Hb_003849_240 Hb_003849_240 Hb_009732_020--Hb_003849_240 Hb_000347_110 Hb_000347_110 Hb_003626_040--Hb_000347_110 Hb_000702_060 Hb_000702_060 Hb_003626_040--Hb_000702_060 Hb_003626_040--Hb_003813_120 Hb_000684_360 Hb_000684_360 Hb_003626_040--Hb_000684_360 Hb_001500_070 Hb_001500_070 Hb_003626_040--Hb_001500_070 Hb_007426_140 Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_000395_220--Hb_011287_010 Hb_000362_110--Hb_000395_220 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_000362_110--Hb_007426_140 Hb_000977_010 Hb_000977_010 Hb_000362_110--Hb_000977_010 Hb_003813_120--Hb_000347_110 Hb_003813_120--Hb_000227_040 Hb_003813_120--Hb_000702_060 Hb_003813_120--Hb_001500_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49328 15.8649 9.46129 11.8924 4.36659 5.59178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31326 5.52748 1.8175 35.6531 4.74324

CAGE analysis