Hb_006717_080

Information

Type -
Description -
Location Contig6717: 59771-61357
Sequence    

Annotation

kegg
ID mtr:MTR_3g043850
description hypothetical protein
nr
ID XP_012065777.1
description PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006717_080 0.0 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
2 Hb_000527_120 0.1912428749 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_012707_020 0.2098662163 - - -
4 Hb_000300_310 0.2105704807 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
5 Hb_000014_190 0.213298263 - - Phytoene dehydrogenase, putative [Ricinus communis]
6 Hb_078477_060 0.2197599594 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
7 Hb_000173_110 0.2234355961 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
8 Hb_000261_300 0.2268322496 - - -
9 Hb_000123_340 0.2275528573 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
10 Hb_001080_030 0.2311860742 - - AMP dependent ligase, putative [Ricinus communis]
11 Hb_007885_110 0.2315821445 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
12 Hb_062671_010 0.2332121038 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_000963_090 0.2372058629 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
14 Hb_010565_030 0.2372199673 - - hypothetical protein VITISV_006810 [Vitis vinifera]
15 Hb_001871_030 0.2385516656 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001925_070 0.2389490567 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
17 Hb_006615_210 0.2394558128 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
18 Hb_002849_160 0.2400940019 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
19 Hb_000375_250 0.2422517613 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
20 Hb_005542_010 0.2436874209 - - Uncharacterized protein TCM_021447 [Theobroma cacao]

Gene co-expression network

sample Hb_006717_080 Hb_006717_080 Hb_000527_120 Hb_000527_120 Hb_006717_080--Hb_000527_120 Hb_012707_020 Hb_012707_020 Hb_006717_080--Hb_012707_020 Hb_000300_310 Hb_000300_310 Hb_006717_080--Hb_000300_310 Hb_000014_190 Hb_000014_190 Hb_006717_080--Hb_000014_190 Hb_078477_060 Hb_078477_060 Hb_006717_080--Hb_078477_060 Hb_000173_110 Hb_000173_110 Hb_006717_080--Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_001366_260 Hb_001366_260 Hb_000527_120--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_007543_020 Hb_007543_020 Hb_000527_120--Hb_007543_020 Hb_000261_300 Hb_000261_300 Hb_012707_020--Hb_000261_300 Hb_006615_210 Hb_006615_210 Hb_012707_020--Hb_006615_210 Hb_093543_010 Hb_093543_010 Hb_012707_020--Hb_093543_010 Hb_040473_010 Hb_040473_010 Hb_012707_020--Hb_040473_010 Hb_012717_030 Hb_012717_030 Hb_012707_020--Hb_012717_030 Hb_000300_310--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_000300_310--Hb_000963_090 Hb_000300_310--Hb_078477_060 Hb_002226_050 Hb_002226_050 Hb_000300_310--Hb_002226_050 Hb_001811_080 Hb_001811_080 Hb_000300_310--Hb_001811_080 Hb_000157_110 Hb_000157_110 Hb_000300_310--Hb_000157_110 Hb_000014_190--Hb_078477_060 Hb_003226_190 Hb_003226_190 Hb_000014_190--Hb_003226_190 Hb_001080_030 Hb_001080_030 Hb_000014_190--Hb_001080_030 Hb_009620_060 Hb_009620_060 Hb_000014_190--Hb_009620_060 Hb_000890_110 Hb_000890_110 Hb_000014_190--Hb_000890_110 Hb_000014_190--Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_078477_060--Hb_001080_030 Hb_001080_150 Hb_001080_150 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_000123_340 Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_001366_260 Hb_000173_110--Hb_000820_100 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0385713 0.140546 0.0584183 0.00937924 0.0128807 0.0225386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0585486 0.0230315 0 0.192915 0.482931

CAGE analysis