Hb_006718_010

Information

Type -
Description -
Location Contig6718: 4097-4608
Sequence    

Annotation

kegg
ID pda:103724231
description histone H2AX-like
nr
ID XP_010914368.1
description PREDICTED: histone H2AX-like [Elaeis guineensis]
swissprot
ID A2ZK26
description Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1
trembl
ID A0A0A0K7H2
description Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006718_010 0.0 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
2 Hb_002025_300 0.0897870333 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
3 Hb_000367_030 0.0944817326 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
4 Hb_006541_020 0.099875494 - - unknown [Lotus japonicus]
5 Hb_000025_240 0.1088866109 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
6 Hb_004223_260 0.1133044049 - - hypothetical protein F383_09277 [Gossypium arboreum]
7 Hb_007520_060 0.1140374191 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
8 Hb_005914_200 0.1181446393 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
9 Hb_000780_210 0.1204510221 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
10 Hb_103118_020 0.1227739003 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
11 Hb_012539_020 0.128248607 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
12 Hb_001623_430 0.131838194 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
13 Hb_004333_030 0.1329822419 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
14 Hb_001377_380 0.136767999 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
15 Hb_000367_210 0.1372143876 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
16 Hb_002843_210 0.1381394652 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
17 Hb_000648_020 0.1430827863 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
18 Hb_000389_080 0.1439279427 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
19 Hb_008748_020 0.1439663606 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
20 Hb_001700_020 0.1453005807 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]

Gene co-expression network

sample Hb_006718_010 Hb_006718_010 Hb_002025_300 Hb_002025_300 Hb_006718_010--Hb_002025_300 Hb_000367_030 Hb_000367_030 Hb_006718_010--Hb_000367_030 Hb_006541_020 Hb_006541_020 Hb_006718_010--Hb_006541_020 Hb_000025_240 Hb_000025_240 Hb_006718_010--Hb_000025_240 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_007520_060 Hb_007520_060 Hb_006718_010--Hb_007520_060 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_005914_200 Hb_005914_200 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_002025_300--Hb_000025_240 Hb_000367_030--Hb_006541_020 Hb_000367_030--Hb_002843_210 Hb_005245_070 Hb_005245_070 Hb_000367_030--Hb_005245_070 Hb_000367_030--Hb_000025_240 Hb_000367_030--Hb_007520_060 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000025_240--Hb_008748_020 Hb_000025_240--Hb_005914_200 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_000819_070 Hb_000819_070 Hb_004223_260--Hb_000819_070 Hb_003349_070 Hb_003349_070 Hb_004223_260--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_004223_260--Hb_000106_100 Hb_000780_210 Hb_000780_210 Hb_004223_260--Hb_000780_210 Hb_001623_430 Hb_001623_430 Hb_004223_260--Hb_001623_430 Hb_009659_020 Hb_009659_020 Hb_007520_060--Hb_009659_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701504 0.344683 0.44595 4.03095 0.936043 5.85817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3726 19.5427 8.13345 5.46145 2.06704

CAGE analysis