Hb_006723_020

Information

Type -
Description -
Location Contig6723: 17781-19518
Sequence    

Annotation

kegg
ID zma:103640874
description ADP-ribosylation factor 1-like
nr
ID KHG17087.1
description ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
swissprot
ID O48649
description ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3
trembl
ID A0A0B0NWQ3
description ARF2-B: ADP-ribosylation factor 2-B OS=Gossypium arboreum GN=F383_20717 PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53487: 17732-21576
cDNA
(Sanger)
(ID:Location)		 002_P06.ab1: 17902-21576 , 003_M14.ab1: 17907-21576 , 016_K10.ab1: 18013-21599 , 018_J17.ab1: 17999-21576 , 019_C12.ab1: 17984-21576 , 020_K22.ab1: 17900-21576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006723_020 0.0 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
2 Hb_000035_130 0.1179980649 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
3 Hb_030328_010 0.1349539911 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
4 Hb_073339_010 0.1390097512 - - hypothetical protein 30 [Hevea brasiliensis]
5 Hb_006455_110 0.1502101483 - - bromodomain-containing protein, putative [Ricinus communis]
6 Hb_000347_150 0.1508778504 - - Nucleolysin TIAR [Morus notabilis]
7 Hb_139859_010 0.1537173549 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
8 Hb_003299_090 0.1552682319 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
9 Hb_000538_080 0.1576114852 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_000270_020 0.1598200802 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
11 Hb_171788_010 0.1605689485 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
12 Hb_000035_120 0.1612227281 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
13 Hb_005965_010 0.1617189735 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
14 Hb_006455_090 0.1651992131 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
15 Hb_001976_050 0.1671439989 - - PREDICTED: protein SKIP34 [Jatropha curcas]
16 Hb_000307_250 0.1688908693 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
17 Hb_005914_090 0.1730877981 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_058381_010 0.1735524877 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
19 Hb_143947_010 0.1751852223 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
20 Hb_000200_040 0.1762016386 - - -

Gene co-expression network

sample Hb_006723_020 Hb_006723_020 Hb_000035_130 Hb_000035_130 Hb_006723_020--Hb_000035_130 Hb_030328_010 Hb_030328_010 Hb_006723_020--Hb_030328_010 Hb_073339_010 Hb_073339_010 Hb_006723_020--Hb_073339_010 Hb_006455_110 Hb_006455_110 Hb_006723_020--Hb_006455_110 Hb_000347_150 Hb_000347_150 Hb_006723_020--Hb_000347_150 Hb_139859_010 Hb_139859_010 Hb_006723_020--Hb_139859_010 Hb_000035_130--Hb_073339_010 Hb_143947_010 Hb_143947_010 Hb_000035_130--Hb_143947_010 Hb_000035_120 Hb_000035_120 Hb_000035_130--Hb_000035_120 Hb_000538_080 Hb_000538_080 Hb_000035_130--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_130--Hb_000878_130 Hb_171788_010 Hb_171788_010 Hb_030328_010--Hb_171788_010 Hb_001386_140 Hb_001386_140 Hb_030328_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_030328_010--Hb_010565_010 Hb_058381_010 Hb_058381_010 Hb_030328_010--Hb_058381_010 Hb_054586_020 Hb_054586_020 Hb_030328_010--Hb_054586_020 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_006455_110--Hb_005965_010 Hb_006455_090 Hb_006455_090 Hb_006455_110--Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_000270_020 Hb_000270_020 Hb_000347_150--Hb_000270_020 Hb_003299_090 Hb_003299_090 Hb_000347_150--Hb_003299_090 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000347_150--Hb_000035_120 Hb_005914_090 Hb_005914_090 Hb_000347_150--Hb_005914_090 Hb_001307_140 Hb_001307_140 Hb_000347_150--Hb_001307_140 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_139859_010--Hb_000270_020 Hb_139859_010--Hb_006455_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1522.28 891.769 76.423 543.124 605.801 3392.44
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
641.525 447.946 592.415 309.16 66.3901

CAGE analysis