Hb_006736_050

Information

Type -
Description -
Location Contig6736: 65498-68182
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04450g
description POPTRDRAFT_762065; hypothetical protein
nr
ID XP_002308007.2
description hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID B9H9H7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04450g PE=4 SV=2
Gene Ontology
ID GO:0005515
description protein iq-domain 14-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53510: 65468-68224
cDNA
(Sanger)
(ID:Location)		 030_B10.ab1: 66922-68224

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006736_050 0.0 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
2 Hb_189003_070 0.1000208675 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
3 Hb_036388_010 0.1031660044 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
4 Hb_006120_060 0.1181737315 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
5 Hb_000768_150 0.1193974707 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
6 Hb_000120_740 0.127702108 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
7 Hb_000283_140 0.1279388802 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_035834_010 0.1287756346 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003783_050 0.1287914407 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002397_050 0.1292460629 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
11 Hb_001195_660 0.1307153459 - - metalloendopeptidase, putative [Ricinus communis]
12 Hb_000046_480 0.1308110824 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
13 Hb_004032_110 0.1313020676 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
14 Hb_001677_040 0.1333746971 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_012807_150 0.1341179738 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
16 Hb_000941_120 0.1342133154 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
17 Hb_010050_020 0.1348776993 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
18 Hb_000327_360 0.1355350869 - - unnamed protein product [Coffea canephora]
19 Hb_000689_050 0.1372004169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012053_020 0.1377448179 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006736_050 Hb_006736_050 Hb_189003_070 Hb_189003_070 Hb_006736_050--Hb_189003_070 Hb_036388_010 Hb_036388_010 Hb_006736_050--Hb_036388_010 Hb_006120_060 Hb_006120_060 Hb_006736_050--Hb_006120_060 Hb_000768_150 Hb_000768_150 Hb_006736_050--Hb_000768_150 Hb_000120_740 Hb_000120_740 Hb_006736_050--Hb_000120_740 Hb_000283_140 Hb_000283_140 Hb_006736_050--Hb_000283_140 Hb_006615_230 Hb_006615_230 Hb_189003_070--Hb_006615_230 Hb_134014_010 Hb_134014_010 Hb_189003_070--Hb_134014_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380 Hb_001119_070 Hb_001119_070 Hb_189003_070--Hb_001119_070 Hb_036388_010--Hb_000768_150 Hb_035834_010 Hb_035834_010 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_036388_010--Hb_000417_380 Hb_012807_150 Hb_012807_150 Hb_006120_060--Hb_012807_150 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_000689_050 Hb_000689_050 Hb_006120_060--Hb_000689_050 Hb_000638_060 Hb_000638_060 Hb_006120_060--Hb_000638_060 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000768_150--Hb_000997_320 Hb_000120_740--Hb_036388_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_000120_740--Hb_035834_010 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281325 1.44054 3.84332 6.04754 0.29565 0.345948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.940516 0.304693 0.369413 2.22958 5.21218

CAGE analysis