Hb_006738_020

Information

Type -
Description -
Location Contig6738: 21281-31339
Sequence    

Annotation

kegg
ID vvi:100249742
description ras-related protein Rab7
nr
ID CAN75406.1
description hypothetical protein VITISV_010510 [Vitis vinifera]
swissprot
ID Q9XER8
description Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1
trembl
ID A5C8F3
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_010510 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006738_020 0.0 - - hypothetical protein VITISV_010510 [Vitis vinifera]
2 Hb_002872_050 0.1319489414 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
3 Hb_000056_070 0.1350875726 - - -
4 Hb_000072_200 0.1376000364 - - PREDICTED: myb-like protein X [Jatropha curcas]
5 Hb_003050_280 0.145773532 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
6 Hb_000457_290 0.1461571484 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
7 Hb_000208_180 0.1482923968 - - PREDICTED: histone H2B-like [Populus euphratica]
8 Hb_140627_010 0.1504509897 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001240_010 0.1526784613 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
10 Hb_001728_060 0.1533856941 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
11 Hb_000107_150 0.1542381368 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
12 Hb_001979_020 0.1552280434 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
13 Hb_001575_060 0.1556809314 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
14 Hb_004125_040 0.1576087164 - - -
15 Hb_000403_070 0.1609843218 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000125_210 0.1612456024 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
17 Hb_006738_030 0.1613181023 - - Ras-related protein Rab7 [Morus notabilis]
18 Hb_000465_070 0.1626941471 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
19 Hb_000159_130 0.1630275459 - - RNA binding protein, putative [Ricinus communis]
20 Hb_019762_050 0.1638922636 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006738_020 Hb_006738_020 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_003050_280 Hb_003050_280 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_002872_050--Hb_003050_280 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_003106_100 Hb_003106_100 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_000056_070--Hb_003050_280 Hb_002232_060 Hb_002232_060 Hb_000072_200--Hb_002232_060 Hb_001979_020 Hb_001979_020 Hb_000072_200--Hb_001979_020 Hb_000465_070 Hb_000465_070 Hb_000072_200--Hb_000465_070 Hb_000072_200--Hb_000107_150 Hb_000035_480 Hb_000035_480 Hb_000072_200--Hb_000035_480 Hb_000072_200--Hb_000457_290 Hb_000318_160 Hb_000318_160 Hb_003050_280--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003349_080 Hb_003349_080 Hb_003050_280--Hb_003349_080 Hb_000224_140 Hb_000224_140 Hb_003050_280--Hb_000224_140 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_000457_290--Hb_000465_070 Hb_000457_290--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_000457_290--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060 Hb_000260_620 Hb_000260_620 Hb_000208_180--Hb_000260_620 Hb_000208_180--Hb_000056_070 Hb_010422_070 Hb_010422_070 Hb_000208_180--Hb_010422_070 Hb_002876_020 Hb_002876_020 Hb_000208_180--Hb_002876_020 Hb_000208_180--Hb_003106_100 Hb_005054_260 Hb_005054_260 Hb_000208_180--Hb_005054_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.470536 0.146914 1.29668 0.705401 0.352442 0.623439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0163 3.96482 1.93376 1.79402 3.18828

CAGE analysis