Hb_006738_030

Information

Type -
Description -
Location Contig6738: 26581-28738
Sequence    

Annotation

kegg
ID atr:s00059p00072050
description AMTR_s00059p00072050; hypothetical protein
nr
ID XP_010098071.1
description Ras-related protein Rab7 [Morus notabilis]
swissprot
ID Q948K6
description Ras-related protein RABG1 OS=Arabidopsis thaliana GN=RABG1 PE=2 SV=1
trembl
ID W9RUV2
description Ras-related protein Rab7 OS=Morus notabilis GN=L484_026203 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006738_030 0.0 - - Ras-related protein Rab7 [Morus notabilis]
2 Hb_000928_130 0.1408215534 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_002026_120 0.149150048 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
4 Hb_001240_020 0.1501762994 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
5 Hb_003849_270 0.155400085 - - -
6 Hb_147752_010 0.1577917293 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
7 Hb_006738_020 0.1613181023 - - hypothetical protein VITISV_010510 [Vitis vinifera]
8 Hb_000302_290 0.1627727925 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
9 Hb_000140_360 0.1697477048 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
10 Hb_023344_050 0.1708730142 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
11 Hb_001153_020 0.1715676258 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
12 Hb_002078_440 0.1717264825 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_183612_060 0.1726483543 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
14 Hb_013405_140 0.1744616559 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
15 Hb_001102_210 0.1761876837 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_007037_020 0.1785329008 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
17 Hb_001979_020 0.1794870993 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
18 Hb_001171_050 0.1796290284 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
19 Hb_003020_150 0.1796947009 - - tropinone reductase, putative [Ricinus communis]
20 Hb_002232_060 0.1800516152 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_006738_030 Hb_006738_030 Hb_000928_130 Hb_000928_130 Hb_006738_030--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_006738_030--Hb_002026_120 Hb_001240_020 Hb_001240_020 Hb_006738_030--Hb_001240_020 Hb_003849_270 Hb_003849_270 Hb_006738_030--Hb_003849_270 Hb_147752_010 Hb_147752_010 Hb_006738_030--Hb_147752_010 Hb_006738_020 Hb_006738_020 Hb_006738_030--Hb_006738_020 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000928_130--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_000928_130--Hb_001240_020 Hb_002026_120--Hb_000096_150 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001240_020--Hb_000445_490 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_000530_120 Hb_000530_120 Hb_003849_270--Hb_000530_120 Hb_003849_270--Hb_000928_130 Hb_003050_280 Hb_003050_280 Hb_003849_270--Hb_003050_280 Hb_003849_270--Hb_000318_160 Hb_003777_040 Hb_003777_040 Hb_003849_270--Hb_003777_040 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_147752_010--Hb_000445_490 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112778 0.18475 0.229674 0.152961 0.0352913 0.100173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.608689 1.50377 0.969799 0.44603 0.805773

CAGE analysis