Hb_006738_050

Information

Type -
Description -
Location Contig6738: 32488-33486
Sequence    

Annotation

kegg
ID rcu:RCOM_1494340
description hypothetical protein
nr
ID XP_012073360.1
description PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53512: 32737-35719 , PASA_asmbl_53513: 32737-33539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006738_050 0.0 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
2 Hb_000700_060 0.0622698027 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
3 Hb_002119_090 0.0752897336 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
4 Hb_004410_070 0.0768865545 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
5 Hb_000205_240 0.0827552419 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_007017_070 0.0829240247 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
7 Hb_004899_040 0.0849459361 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
8 Hb_004785_030 0.0856222628 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
9 Hb_000197_030 0.0891626261 - - hypothetical protein RCOM_1447500 [Ricinus communis]
10 Hb_005389_160 0.0897408739 - - PREDICTED: casein kinase I [Jatropha curcas]
11 Hb_002903_140 0.0905827975 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
12 Hb_125126_010 0.0929057147 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
13 Hb_000363_120 0.0934677492 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
14 Hb_000373_100 0.0957560014 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
15 Hb_011249_060 0.0958409587 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
16 Hb_127599_010 0.0969110683 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
17 Hb_000059_020 0.0971352427 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
18 Hb_000940_200 0.098800246 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
19 Hb_000649_250 0.0998961576 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
20 Hb_000069_130 0.1003195955 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006738_050 Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_006738_050--Hb_000700_060 Hb_002119_090 Hb_002119_090 Hb_006738_050--Hb_002119_090 Hb_004410_070 Hb_004410_070 Hb_006738_050--Hb_004410_070 Hb_000205_240 Hb_000205_240 Hb_006738_050--Hb_000205_240 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_004899_040 Hb_004899_040 Hb_006738_050--Hb_004899_040 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_002284_170 Hb_002284_170 Hb_000700_060--Hb_002284_170 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_002119_090--Hb_004785_030 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002119_090--Hb_002284_170 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_004410_070--Hb_000069_130 Hb_000363_120 Hb_000363_120 Hb_000205_240--Hb_000363_120 Hb_000802_090 Hb_000802_090 Hb_000205_240--Hb_000802_090 Hb_084490_010 Hb_084490_010 Hb_000205_240--Hb_084490_010 Hb_000649_250 Hb_000649_250 Hb_000205_240--Hb_000649_250 Hb_003398_080 Hb_003398_080 Hb_000205_240--Hb_003398_080 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_007017_070--Hb_000723_110 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_011249_060 Hb_011249_060 Hb_004899_040--Hb_011249_060 Hb_004899_040--Hb_000363_120 Hb_009302_030 Hb_009302_030 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_004899_040--Hb_000649_250 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65234 26.892 10.5343 10.4127 7.18273 8.95243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65323 4.94838 6.24309 8.90694 5.38775

CAGE analysis