Hb_006750_010

Information

Type -
Description -
Location Contig6750: 28546-38109
Sequence    

Annotation

kegg
ID rcu:RCOM_0488310
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_002524194.1
description Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
swissprot
ID A8MRC7
description Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1
trembl
ID B9SDX5
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_0488310 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53531: 28565-38055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006750_010 0.0 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
2 Hb_003462_040 0.1018085559 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_028396_020 0.1053393227 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
4 Hb_001369_010 0.1134960637 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_000820_110 0.1160244329 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
6 Hb_001195_380 0.1178742383 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
7 Hb_019516_060 0.119762262 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
8 Hb_002613_040 0.1204405723 - - phosphate translocator-related family protein [Populus trichocarpa]
9 Hb_020378_020 0.1234956962 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_003086_030 0.1237820228 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
11 Hb_001008_080 0.1239738289 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
12 Hb_003006_090 0.1241681274 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
13 Hb_000251_120 0.1241891737 - - O-acetyltransferase, putative [Ricinus communis]
14 Hb_003226_250 0.1248728406 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
15 Hb_003929_240 0.1260053071 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
16 Hb_001789_100 0.1261544212 - - conserved hypothetical protein [Ricinus communis]
17 Hb_114917_010 0.1265993541 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_001001_070 0.1328875648 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
19 Hb_006569_080 0.1339726411 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
20 Hb_000005_370 0.1340448112 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]

Gene co-expression network

sample Hb_006750_010 Hb_006750_010 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_003462_040--Hb_001369_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_114917_010 Hb_114917_010 Hb_028396_020--Hb_114917_010 Hb_020378_020 Hb_020378_020 Hb_028396_020--Hb_020378_020 Hb_034168_050 Hb_034168_050 Hb_028396_020--Hb_034168_050 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_028396_020--Hb_001677_040 Hb_001369_010--Hb_003226_250 Hb_000808_150 Hb_000808_150 Hb_001369_010--Hb_000808_150 Hb_001369_010--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_001369_010--Hb_000749_020 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_000820_110--Hb_019516_060 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_000580_110 Hb_000580_110 Hb_001195_380--Hb_000580_110 Hb_000251_120 Hb_000251_120 Hb_001195_380--Hb_000251_120 Hb_001008_080 Hb_001008_080 Hb_001195_380--Hb_001008_080 Hb_002495_030 Hb_002495_030 Hb_001195_380--Hb_002495_030 Hb_002596_080 Hb_002596_080 Hb_001195_380--Hb_002596_080 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.452619 2.6004 4.83261 16.1655 0.366407 0.781261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.728104 0.752965 0.528692 1.48379 13.5888

CAGE analysis