Hb_006775_010

Information

Type transcription factor
Description TF Family: M-type
Location Contig6775: 10814-11923
Sequence    

Annotation

kegg
ID csv:101225158
description floral homeotic protein AGAMOUS-like
nr
ID AAQ83494.1
description AGAMOUS [Populus yunnanensis]
swissprot
ID Q2QW53
description MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2
trembl
ID Q6UVH8
description AGAMOUS (Fragment) OS=Populus tomentosa GN=AG2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description floral homeotic protein agamous isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53609: 10476-25373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_010 0.0 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
2 Hb_000212_220 0.0036216924 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000069_680 0.0126835487 - - -
4 Hb_019093_010 0.015459242 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
5 Hb_005109_030 0.0329643184 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
6 Hb_036609_010 0.0451229324 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
7 Hb_001422_040 0.0689605801 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
8 Hb_018264_010 0.0695109445 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
9 Hb_149181_020 0.0700449298 - - -
10 Hb_003878_040 0.0764726844 - - -
11 Hb_004208_110 0.1170129655 - - -
12 Hb_007122_030 0.1171298257 - - -
13 Hb_086639_060 0.119297061 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
14 Hb_136367_010 0.1258014513 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
15 Hb_000232_050 0.1342801929 - - -
16 Hb_000513_010 0.1401787821 - - -
17 Hb_032107_010 0.1431295179 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
18 Hb_032252_040 0.143575569 - - -
19 Hb_011457_010 0.1475037925 - - nucleolar protein nop56, putative [Ricinus communis]
20 Hb_110798_010 0.1488584179 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_006775_010 Hb_006775_010 Hb_000212_220 Hb_000212_220 Hb_006775_010--Hb_000212_220 Hb_000069_680 Hb_000069_680 Hb_006775_010--Hb_000069_680 Hb_019093_010 Hb_019093_010 Hb_006775_010--Hb_019093_010 Hb_005109_030 Hb_005109_030 Hb_006775_010--Hb_005109_030 Hb_036609_010 Hb_036609_010 Hb_006775_010--Hb_036609_010 Hb_001422_040 Hb_001422_040 Hb_006775_010--Hb_001422_040 Hb_000212_220--Hb_000069_680 Hb_000212_220--Hb_019093_010 Hb_000212_220--Hb_005109_030 Hb_000212_220--Hb_036609_010 Hb_000212_220--Hb_001422_040 Hb_000069_680--Hb_019093_010 Hb_000069_680--Hb_005109_030 Hb_000069_680--Hb_036609_010 Hb_000069_680--Hb_001422_040 Hb_019093_010--Hb_005109_030 Hb_019093_010--Hb_036609_010 Hb_019093_010--Hb_001422_040 Hb_005109_030--Hb_036609_010 Hb_005109_030--Hb_001422_040 Hb_018264_010 Hb_018264_010 Hb_005109_030--Hb_018264_010 Hb_149181_020 Hb_149181_020 Hb_005109_030--Hb_149181_020 Hb_036609_010--Hb_001422_040 Hb_036609_010--Hb_018264_010 Hb_036609_010--Hb_149181_020 Hb_003878_040 Hb_003878_040 Hb_036609_010--Hb_003878_040 Hb_001422_040--Hb_018264_010 Hb_001422_040--Hb_149181_020 Hb_001422_040--Hb_003878_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206199 0 0 0.139295 0

CAGE analysis