Hb_006775_100

Information

Type -
Description -
Location Contig6775: 79639-84330
Sequence    

Annotation

kegg
ID rcu:RCOM_1253110
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002522297.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID F4JXC5
description Subtilisin-like protease SBT5.4 OS=Arabidopsis thaliana GN=SBT5.4 PE=1 SV=1
trembl
ID B9S8H8
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1253110 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53615: 79681-83917 , PASA_asmbl_53616: 79776-83917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_100 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_001916_110 0.063994974 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
3 Hb_011716_140 0.0819874705 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
4 Hb_002078_280 0.0834011867 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
5 Hb_002805_200 0.0837258943 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
6 Hb_001662_090 0.0846944529 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_003683_170 0.0870550441 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000030_070 0.0884574528 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000188_010 0.0896153743 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
10 Hb_001864_050 0.0960333822 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
11 Hb_002561_040 0.096870741 - - Photosynthetic electron transfer C [Theobroma cacao]
12 Hb_000809_190 0.0988160694 - - PREDICTED: myosin-6-like [Jatropha curcas]
13 Hb_000749_140 0.0990189845 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
14 Hb_003921_020 0.100076248 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
15 Hb_006555_020 0.1020993548 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
16 Hb_005618_030 0.1021864624 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
17 Hb_001233_050 0.1023205314 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
18 Hb_000386_010 0.1030500576 - - conserved hypothetical protein [Ricinus communis]
19 Hb_101133_030 0.1057751328 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
20 Hb_000340_280 0.1075074163 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006775_100 Hb_006775_100 Hb_001916_110 Hb_001916_110 Hb_006775_100--Hb_001916_110 Hb_011716_140 Hb_011716_140 Hb_006775_100--Hb_011716_140 Hb_002078_280 Hb_002078_280 Hb_006775_100--Hb_002078_280 Hb_002805_200 Hb_002805_200 Hb_006775_100--Hb_002805_200 Hb_001662_090 Hb_001662_090 Hb_006775_100--Hb_001662_090 Hb_003683_170 Hb_003683_170 Hb_006775_100--Hb_003683_170 Hb_000749_140 Hb_000749_140 Hb_001916_110--Hb_000749_140 Hb_001916_110--Hb_002805_200 Hb_000340_280 Hb_000340_280 Hb_001916_110--Hb_000340_280 Hb_000928_100 Hb_000928_100 Hb_001916_110--Hb_000928_100 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030 Hb_011716_140--Hb_002078_280 Hb_030565_020 Hb_030565_020 Hb_011716_140--Hb_030565_020 Hb_002253_020 Hb_002253_020 Hb_011716_140--Hb_002253_020 Hb_011512_100 Hb_011512_100 Hb_011716_140--Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_011716_140--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_011716_140--Hb_002259_020 Hb_002078_280--Hb_011512_100 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_000281_120 Hb_000281_120 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_002805_200--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_002805_200--Hb_001233_050 Hb_001662_090--Hb_002805_200 Hb_001662_090--Hb_001864_050 Hb_005305_140 Hb_005305_140 Hb_001662_090--Hb_005305_140 Hb_001662_090--Hb_001916_110 Hb_000386_010 Hb_000386_010 Hb_001662_090--Hb_000386_010 Hb_000030_070 Hb_000030_070 Hb_003683_170--Hb_000030_070 Hb_001287_020 Hb_001287_020 Hb_003683_170--Hb_001287_020 Hb_005618_030 Hb_005618_030 Hb_003683_170--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_003683_170--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_003683_170--Hb_006555_020 Hb_003683_170--Hb_001638_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.475944 8.7753 0.746844 0.00793749 0.00693129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0283225 0.026987 0.0506176 5.86749

CAGE analysis