Hb_006788_040

Information

Type -
Description -
Location Contig6788: 20079-20820
Sequence    

Annotation

kegg
ID rcu:RCOM_0990960
description calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002520954.1
description calmodulin, putative [Ricinus communis]
swissprot
ID O23320
description Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=2 SV=1
trembl
ID B9S4P7
description Calmodulin, putative OS=Ricinus communis GN=RCOM_0990960 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53647: 19953-20367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_040 0.0 - - calmodulin, putative [Ricinus communis]
2 Hb_001922_030 0.1696495837 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
3 Hb_000003_110 0.1717254991 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_005784_060 0.1801265256 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
5 Hb_000015_190 0.1837080905 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
6 Hb_000920_160 0.187805848 - - annexin [Manihot esculenta]
7 Hb_000120_940 0.1900554671 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
8 Hb_001616_100 0.1902374684 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
9 Hb_009545_030 0.1911121475 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_000529_010 0.1950201316 - - cyclin d, putative [Ricinus communis]
11 Hb_000806_130 0.1984422699 - - Adenosine kinase 2 [Theobroma cacao]
12 Hb_050229_010 0.2031894469 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_007138_030 0.2031935211 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
14 Hb_000463_120 0.2035563127 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
15 Hb_005253_020 0.2058038551 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
16 Hb_009767_050 0.2064692349 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
17 Hb_003001_050 0.2066068296 - - hypothetical protein RCOM_1749890 [Ricinus communis]
18 Hb_001148_100 0.2085517224 - - -
19 Hb_029223_040 0.2090127088 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_061222_010 0.2102686964 - - hypothetical protein RCOM_0012650 [Ricinus communis]

Gene co-expression network

sample Hb_006788_040 Hb_006788_040 Hb_001922_030 Hb_001922_030 Hb_006788_040--Hb_001922_030 Hb_000003_110 Hb_000003_110 Hb_006788_040--Hb_000003_110 Hb_005784_060 Hb_005784_060 Hb_006788_040--Hb_005784_060 Hb_000015_190 Hb_000015_190 Hb_006788_040--Hb_000015_190 Hb_000920_160 Hb_000920_160 Hb_006788_040--Hb_000920_160 Hb_000120_940 Hb_000120_940 Hb_006788_040--Hb_000120_940 Hb_031089_020 Hb_031089_020 Hb_001922_030--Hb_031089_020 Hb_001922_030--Hb_000920_160 Hb_001329_180 Hb_001329_180 Hb_001922_030--Hb_001329_180 Hb_001922_030--Hb_000120_940 Hb_026527_010 Hb_026527_010 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_061222_010 Hb_061222_010 Hb_000003_110--Hb_061222_010 Hb_000003_110--Hb_005784_060 Hb_002900_180 Hb_002900_180 Hb_000003_110--Hb_002900_180 Hb_005253_020 Hb_005253_020 Hb_000003_110--Hb_005253_020 Hb_002292_080 Hb_002292_080 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_000975_200 Hb_000975_200 Hb_005784_060--Hb_000975_200 Hb_000997_240 Hb_000997_240 Hb_005784_060--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_000015_190--Hb_001616_100 Hb_000561_040 Hb_000561_040 Hb_000015_190--Hb_000561_040 Hb_003001_050 Hb_003001_050 Hb_000015_190--Hb_003001_050 Hb_027400_020 Hb_027400_020 Hb_000015_190--Hb_027400_020 Hb_001777_010 Hb_001777_010 Hb_000015_190--Hb_001777_010 Hb_000419_140 Hb_000419_140 Hb_000015_190--Hb_000419_140 Hb_000920_160--Hb_000120_940 Hb_000920_160--Hb_031089_020 Hb_002759_070 Hb_002759_070 Hb_000920_160--Hb_002759_070 Hb_000920_160--Hb_001329_180 Hb_000920_160--Hb_026527_010 Hb_000120_940--Hb_002759_070 Hb_000120_940--Hb_005253_020 Hb_000120_940--Hb_000463_120 Hb_000003_210 Hb_000003_210 Hb_000120_940--Hb_000003_210 Hb_000297_140 Hb_000297_140 Hb_000120_940--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0973076 1.8629 9.07758 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431622 0.508584 0.535521 3.37027 2.05592

CAGE analysis