Hb_006788_070

Information

Type -
Description -
Location Contig6788: 30251-37490
Sequence    

Annotation

kegg
ID rcu:RCOM_0990980
description chloroplast inner envelope protein, putative
nr
ID BAH10643.1
description 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
swissprot
ID P23525
description 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic OS=Spinacia oleracea PE=1 SV=1
trembl
ID B7X940
description 2-methyl-6-geranylgeranylbenzoquinone methyltranferase OS=Hevea brasiliensis GN=mggbqmt PE=2 SV=1
Gene Ontology
ID GO:0019031
description 2-methyl-6-phytyl- -hydroquinone chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53648: 30176-37464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_070 0.0 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
2 Hb_000175_070 0.0717627386 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_000023_140 0.0792361244 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
4 Hb_011310_070 0.082598737 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_009558_020 0.0827943681 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
6 Hb_005063_040 0.0835781843 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
7 Hb_007193_100 0.0903487421 - - syntaxin family protein [Populus trichocarpa]
8 Hb_133271_020 0.0910584629 - - prohibitin, putative [Ricinus communis]
9 Hb_001776_110 0.0920789057 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
10 Hb_002616_050 0.0931031375 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
11 Hb_000029_030 0.0937388746 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
12 Hb_004453_150 0.0943356387 - - BnaC02g13240D [Brassica napus]
13 Hb_007919_050 0.0949464202 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
14 Hb_118419_020 0.0964278424 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
15 Hb_004662_030 0.0965066468 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
16 Hb_005686_110 0.0970200808 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_006569_020 0.0973012257 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
18 Hb_002112_040 0.0975021615 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
19 Hb_002686_270 0.0981474265 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158092_070 0.0985928139 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_006788_070 Hb_006788_070 Hb_000175_070 Hb_000175_070 Hb_006788_070--Hb_000175_070 Hb_000023_140 Hb_000023_140 Hb_006788_070--Hb_000023_140 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_009558_020 Hb_009558_020 Hb_006788_070--Hb_009558_020 Hb_005063_040 Hb_005063_040 Hb_006788_070--Hb_005063_040 Hb_007193_100 Hb_007193_100 Hb_006788_070--Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_000175_070--Hb_009558_020 Hb_002616_050 Hb_002616_050 Hb_000023_140--Hb_002616_050 Hb_005754_060 Hb_005754_060 Hb_000023_140--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_000023_140--Hb_071736_010 Hb_001855_010 Hb_001855_010 Hb_000023_140--Hb_001855_010 Hb_000023_140--Hb_005063_040 Hb_009111_050 Hb_009111_050 Hb_011310_070--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_011310_070--Hb_001454_210 Hb_008066_010 Hb_008066_010 Hb_011310_070--Hb_008066_010 Hb_000029_030 Hb_000029_030 Hb_011310_070--Hb_000029_030 Hb_011310_070--Hb_071736_010 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_005063_040--Hb_002616_050 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.264 16.0569 30.8166 52.8198 112.105 219.301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
201.546 135.461 141.649 56.528 35.2852

CAGE analysis