Hb_006788_110

Information

Type -
Description -
Location Contig6788: 61790-66042
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04750g
description POPTRDRAFT_754257; hypothetical protein
nr
ID XP_012092138.1
description PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
swissprot
ID Q9LF24
description Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1
trembl
ID A0A067JC11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53657: 61829-63068 , PASA_asmbl_53658: 65506-66173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_110 0.0 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
2 Hb_033312_070 0.071345603 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
3 Hb_003376_140 0.0768123661 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
4 Hb_000735_020 0.0948547775 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
5 Hb_004531_160 0.099053409 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
6 Hb_000984_130 0.1045462168 - - tubulin [Ornithogalum longebracteatum]
7 Hb_011918_070 0.1051594851 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
8 Hb_002073_170 0.1063116889 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
9 Hb_002272_120 0.1064207651 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_085962_010 0.1069598467 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
11 Hb_006002_050 0.1073585418 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
12 Hb_000003_280 0.1077318544 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000997_080 0.1089227931 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
14 Hb_002701_030 0.1106063218 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_000417_210 0.1107637795 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000395_310 0.1108293653 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_005542_120 0.1109253189 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
18 Hb_000011_280 0.1118657917 - - pectinesterase family protein [Populus trichocarpa]
19 Hb_053264_010 0.1123654222 - - beta glucosidase [Hevea brasiliensis]
20 Hb_000303_060 0.1148590281 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006788_110 Hb_006788_110 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_000735_020 Hb_000735_020 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_011918_070 Hb_011918_070 Hb_006788_110--Hb_011918_070 Hb_033312_070--Hb_000735_020 Hb_033312_070--Hb_011918_070 Hb_015934_080 Hb_015934_080 Hb_033312_070--Hb_015934_080 Hb_012518_080 Hb_012518_080 Hb_033312_070--Hb_012518_080 Hb_001085_190 Hb_001085_190 Hb_033312_070--Hb_001085_190 Hb_003376_140--Hb_004531_160 Hb_006154_010 Hb_006154_010 Hb_003376_140--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_003376_140--Hb_169077_030 Hb_000193_070 Hb_000193_070 Hb_003376_140--Hb_000193_070 Hb_000103_300 Hb_000103_300 Hb_003376_140--Hb_000103_300 Hb_000735_020--Hb_001085_190 Hb_000735_020--Hb_012518_080 Hb_000735_020--Hb_011918_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_010142_060 Hb_010142_060 Hb_004531_160--Hb_010142_060 Hb_001079_050 Hb_001079_050 Hb_004531_160--Hb_001079_050 Hb_003607_090 Hb_003607_090 Hb_004531_160--Hb_003607_090 Hb_002600_120 Hb_002600_120 Hb_004531_160--Hb_002600_120 Hb_005648_020 Hb_005648_020 Hb_004531_160--Hb_005648_020 Hb_000997_080 Hb_000997_080 Hb_000984_130--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000984_130--Hb_000011_280 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000984_130--Hb_000735_020 Hb_002701_030 Hb_002701_030 Hb_000984_130--Hb_002701_030 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0422792 0.491233 2.39666 6.61797 0.0463763 0.0363922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0144162 0.0274633 0.870375 2.57206

CAGE analysis