Hb_006788_140

Information

Type -
Description -
Location Contig6788: 96698-99475
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23830g
description POPTRDRAFT_559623; hypothetical protein
nr
ID XP_012092135.1
description PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21854 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53662: 96721-99354 , PASA_asmbl_53663: 96698-99308
cDNA
(Sanger)
(ID:Location)		 024_L20.ab1: 96698-97740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_140 0.0 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
2 Hb_000019_040 0.0994175805 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
3 Hb_000987_060 0.1128117797 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
4 Hb_189208_020 0.1190978685 - - LRX2, putative [Ricinus communis]
5 Hb_003175_030 0.1193335665 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
6 Hb_000976_280 0.1218940746 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
7 Hb_002097_200 0.1233797915 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_009627_030 0.1273527577 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
9 Hb_000951_130 0.1279154502 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
10 Hb_088753_010 0.1285537932 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
11 Hb_010381_030 0.129305153 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
12 Hb_002042_130 0.1312199119 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
13 Hb_007382_120 0.1317012459 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
14 Hb_005207_050 0.131860481 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
15 Hb_001766_020 0.1337604666 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
16 Hb_034688_020 0.1361760472 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
17 Hb_012573_040 0.136872626 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
18 Hb_013241_010 0.1371426776 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
19 Hb_002701_220 0.1372191558 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
20 Hb_004724_210 0.1375787454 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006788_140 Hb_006788_140 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_000987_060 Hb_000987_060 Hb_006788_140--Hb_000987_060 Hb_189208_020 Hb_189208_020 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_002097_200 Hb_002097_200 Hb_006788_140--Hb_002097_200 Hb_000019_040--Hb_000976_280 Hb_000512_010 Hb_000512_010 Hb_000019_040--Hb_000512_010 Hb_001766_020 Hb_001766_020 Hb_000019_040--Hb_001766_020 Hb_052764_030 Hb_052764_030 Hb_000019_040--Hb_052764_030 Hb_001104_170 Hb_001104_170 Hb_000019_040--Hb_001104_170 Hb_001856_200 Hb_001856_200 Hb_000987_060--Hb_001856_200 Hb_000732_250 Hb_000732_250 Hb_000987_060--Hb_000732_250 Hb_007943_050 Hb_007943_050 Hb_000987_060--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000987_060--Hb_006909_060 Hb_000987_060--Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_010381_030 Hb_010381_030 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003752_100 Hb_003752_100 Hb_003175_030--Hb_003752_100 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080 Hb_001484_020 Hb_001484_020 Hb_000976_280--Hb_001484_020 Hb_003605_240 Hb_003605_240 Hb_000976_280--Hb_003605_240 Hb_013241_010 Hb_013241_010 Hb_000976_280--Hb_013241_010 Hb_000077_390 Hb_000077_390 Hb_000976_280--Hb_000077_390 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_002097_200--Hb_003752_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.4249 161.671 49.9207 74.0867 20.0878 23.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.2951 72.0635 60.9137 61.8952 31.6659

CAGE analysis