Hb_006788_160

Information

Type -
Description -
Location Contig6788: 108214-119353
Sequence    

Annotation

kegg
ID rcu:RCOM_0991550
description interferon-induced guanylate-binding protein, putative
nr
ID XP_002302079.2
description hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
swissprot
ID Q96PP9
description Guanylate-binding protein 4 OS=Homo sapiens GN=GBP4 PE=2 SV=2
trembl
ID B9GS80
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04680g PE=4 SV=2
Gene Ontology
ID GO:0003924
description guanylate-binding protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_160 0.0 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
2 Hb_000345_170 0.1143142119 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_154745_010 0.1165086716 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_000977_210 0.1238006718 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
5 Hb_002527_030 0.1309679441 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
6 Hb_010642_030 0.1312007887 - - zinc phosphodiesterase, putative [Ricinus communis]
7 Hb_000367_130 0.1361065085 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001014_050 0.137254881 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
9 Hb_000523_090 0.1384294397 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
10 Hb_000093_080 0.1390301811 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
11 Hb_000364_080 0.1397634055 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
12 Hb_000920_060 0.1417503653 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
13 Hb_008785_040 0.1427083825 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
14 Hb_001390_110 0.1427272468 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
15 Hb_002045_240 0.1427909162 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
16 Hb_108216_040 0.1430349715 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
17 Hb_000794_050 0.1432278194 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
18 Hb_006915_070 0.1441553705 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
19 Hb_008489_020 0.1441651412 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
20 Hb_005829_010 0.1442773946 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]

Gene co-expression network

sample Hb_006788_160 Hb_006788_160 Hb_000345_170 Hb_000345_170 Hb_006788_160--Hb_000345_170 Hb_154745_010 Hb_154745_010 Hb_006788_160--Hb_154745_010 Hb_000977_210 Hb_000977_210 Hb_006788_160--Hb_000977_210 Hb_002527_030 Hb_002527_030 Hb_006788_160--Hb_002527_030 Hb_010642_030 Hb_010642_030 Hb_006788_160--Hb_010642_030 Hb_000367_130 Hb_000367_130 Hb_006788_160--Hb_000367_130 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_154745_010--Hb_023386_040 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_000977_210--Hb_000345_170 Hb_000093_080 Hb_000093_080 Hb_000977_210--Hb_000093_080 Hb_003794_010 Hb_003794_010 Hb_000977_210--Hb_003794_010 Hb_000977_210--Hb_002890_020 Hb_000510_200 Hb_000510_200 Hb_000977_210--Hb_000510_200 Hb_000977_210--Hb_006915_070 Hb_000116_180 Hb_000116_180 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_000645_050 Hb_000645_050 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_000085_060 Hb_000085_060 Hb_002527_030--Hb_000085_060 Hb_000364_080 Hb_000364_080 Hb_010642_030--Hb_000364_080 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_000523_090 Hb_000523_090 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_002067_020 Hb_002067_020 Hb_010642_030--Hb_002067_020 Hb_002942_160 Hb_002942_160 Hb_010642_030--Hb_002942_160 Hb_000913_050 Hb_000913_050 Hb_000367_130--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_000367_130--Hb_000679_130 Hb_001983_030 Hb_001983_030 Hb_000367_130--Hb_001983_030 Hb_001444_010 Hb_001444_010 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_001828_160 Hb_001828_160 Hb_000367_130--Hb_001828_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.765737 0.355098 0.157142 0.2034 0.465179 0.623316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.485939 0.50307 0.152144 0.160298 0.5509

CAGE analysis