Hb_006794_010

Information

Type -
Description -
Location Contig6794: 11622-12325
Sequence    

Annotation

kegg
ID rcu:RCOM_1685980
description Elicitor-responsive protein, putative
nr
ID AEH05973.1
description elicitor-responsive protein [Hevea brasiliensis]
swissprot
ID Q0JBH9
description Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1
trembl
ID F8SKC5
description Elicitor-responsive protein OS=Hevea brasiliensis GN=ERP PE=2 SV=1
Gene Ontology
ID GO:0005623
description elicitor-responsive protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53728: 11796-12214
cDNA
(Sanger)
(ID:Location)		 050_A16.ab1: 11373-12495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006794_010 0.0 - - elicitor-responsive protein [Hevea brasiliensis]
2 Hb_011200_010 0.1078850664 - - -
3 Hb_005107_020 0.1394133987 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
4 Hb_000025_080 0.1783138306 - - -
5 Hb_009119_010 0.1810747506 - - -
6 Hb_006162_020 0.1830543744 - - -
7 Hb_022614_010 0.1855468422 - - -
8 Hb_002972_060 0.1864582828 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_162090_010 0.1873534005 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
10 Hb_000953_120 0.1921724528 - - -
11 Hb_000033_070 0.1980684444 - - unnamed protein product [Oryza sativa Japonica Group]
12 Hb_002016_030 0.1982701805 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017014_020 0.208459998 - - -
14 Hb_003025_060 0.2086932106 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
15 Hb_008096_020 0.2102903058 - - -
16 Hb_000292_080 0.2118766217 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
17 Hb_000034_090 0.212765827 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
18 Hb_000876_010 0.2131222881 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
19 Hb_183522_010 0.2144459528 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_005318_010 0.2149802226 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_006794_010 Hb_006794_010 Hb_011200_010 Hb_011200_010 Hb_006794_010--Hb_011200_010 Hb_005107_020 Hb_005107_020 Hb_006794_010--Hb_005107_020 Hb_000025_080 Hb_000025_080 Hb_006794_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_006794_010--Hb_009119_010 Hb_006162_020 Hb_006162_020 Hb_006794_010--Hb_006162_020 Hb_022614_010 Hb_022614_010 Hb_006794_010--Hb_022614_010 Hb_011200_010--Hb_005107_020 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_011200_010--Hb_012675_080 Hb_011200_010--Hb_006162_020 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_005107_020--Hb_006162_020 Hb_005107_020--Hb_012675_080 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_000953_120 Hb_000953_120 Hb_000025_080--Hb_000953_120 Hb_000025_080--Hb_009119_010 Hb_162090_010 Hb_162090_010 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_002016_030 Hb_002016_030 Hb_000025_080--Hb_002016_030 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_009119_010--Hb_000953_120 Hb_009119_010--Hb_002016_030 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_006162_020--Hb_162090_010 Hb_006162_020--Hb_022614_010 Hb_006162_020--Hb_017014_020 Hb_006162_020--Hb_000034_090 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_022614_010--Hb_162090_010 Hb_022614_010--Hb_017014_020 Hb_022614_010--Hb_005107_020 Hb_022614_010--Hb_013394_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1189.7 104.8 173.095 11252.8 389.092 8422.18
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
877.084 700.715 306.866 224.613 47.8423

CAGE analysis