Hb_006807_010

Information

Type -
Description -
Location Contig6807: 1-909
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID KDP43871.1
description hypothetical protein JCGZ_20881 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20881 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53773: 113-928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006807_010 0.0 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
2 Hb_151870_010 0.1051686494 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_002631_270 0.1192879589 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
4 Hb_000169_100 0.1196338622 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
5 Hb_155423_010 0.1243077323 - - -
6 Hb_017225_030 0.1272554706 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
7 Hb_029727_010 0.1455762254 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000054_130 0.1472219595 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
9 Hb_003714_030 0.1513679024 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_038833_010 0.1514292209 - - polyprotein [Ananas comosus]
11 Hb_001248_140 0.1611839654 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_000968_070 0.1613959498 - - -
13 Hb_002447_100 0.1677862744 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
14 Hb_003450_010 0.1691132411 - - -
15 Hb_167211_010 0.1708780641 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
16 Hb_007295_020 0.1714384409 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
17 Hb_001109_170 0.1725240256 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
18 Hb_170878_060 0.1753524143 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
19 Hb_009851_090 0.17752236 - - Protein ABIL2, putative [Ricinus communis]
20 Hb_003992_220 0.1777564734 - - s-receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006807_010 Hb_006807_010 Hb_151870_010 Hb_151870_010 Hb_006807_010--Hb_151870_010 Hb_002631_270 Hb_002631_270 Hb_006807_010--Hb_002631_270 Hb_000169_100 Hb_000169_100 Hb_006807_010--Hb_000169_100 Hb_155423_010 Hb_155423_010 Hb_006807_010--Hb_155423_010 Hb_017225_030 Hb_017225_030 Hb_006807_010--Hb_017225_030 Hb_029727_010 Hb_029727_010 Hb_006807_010--Hb_029727_010 Hb_151870_010--Hb_002631_270 Hb_151870_010--Hb_155423_010 Hb_151870_010--Hb_017225_030 Hb_009851_090 Hb_009851_090 Hb_151870_010--Hb_009851_090 Hb_102761_010 Hb_102761_010 Hb_151870_010--Hb_102761_010 Hb_002631_270--Hb_155423_010 Hb_002631_270--Hb_017225_030 Hb_002631_270--Hb_009851_090 Hb_002631_270--Hb_029727_010 Hb_000169_100--Hb_029727_010 Hb_000169_100--Hb_017225_030 Hb_000169_100--Hb_002631_270 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_155423_010--Hb_009851_090 Hb_002447_100 Hb_002447_100 Hb_155423_010--Hb_002447_100 Hb_000567_270 Hb_000567_270 Hb_155423_010--Hb_000567_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_000260_730 Hb_000260_730 Hb_017225_030--Hb_000260_730 Hb_017225_030--Hb_029727_010 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_029727_010--Hb_000260_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.653968 0.212181 2.07149 0 0.0569769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.2288 5.47666

CAGE analysis