Hb_006810_040

Information

Type -
Description -
Location Contig6810: 18337-20810
Sequence    

Annotation

kegg
ID rcu:RCOM_1452350
description Aspartic proteinase nepenthesin-1 precursor, putative (EC:3.4.23.3)
nr
ID XP_002513044.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q766C2
description Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1
trembl
ID B9RG92
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_1452350 PE=4 SV=1
Gene Ontology
ID GO:0009505
description protein aspartic protease in guard cell 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53779: 18512-20897 , PASA_asmbl_53780: 18512-20950
cDNA
(Sanger)
(ID:Location)		 001_A02.ab1: 18512-19776 , 003_K11.ab1: 18512-19755 , 006_P06.ab1: 18512-19747 , 011_F11.ab1: 18512-19792 , 026_O11.ab1: 18519-19625 , 027_O10.ab1: 18512-19748 , 029_I23.ab1: 18517-18818 , 040_K05.ab1: 18512-19792 , 044_G22.ab1: 18512-19739 , 049_F11.ab1: 18512-19633

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006810_040 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_001971_040 0.0610364902 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
3 Hb_000522_160 0.067598483 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_002028_270 0.0751701639 - - Pectinesterase-1 precursor, putative [Ricinus communis]
5 Hb_159809_040 0.0790428468 - - conserved hypothetical protein [Ricinus communis]
6 Hb_089140_070 0.082346782 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
7 Hb_005332_030 0.0844781538 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000538_290 0.08666794 - - hypothetical protein RCOM_0303940 [Ricinus communis]
9 Hb_001950_090 0.0906699692 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
10 Hb_002686_320 0.0914095416 - - syntaxin, putative [Ricinus communis]
11 Hb_000317_120 0.093040498 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
12 Hb_000345_230 0.0951053895 - - -
13 Hb_000977_190 0.095200927 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001348_100 0.0956569052 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
15 Hb_007126_010 0.0985858905 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_006693_010 0.0986393907 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
17 Hb_000359_100 0.1009186391 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000862_050 0.1009510711 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
19 Hb_000576_140 0.1049551842 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
20 Hb_000098_270 0.1051279015 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]

Gene co-expression network

sample Hb_006810_040 Hb_006810_040 Hb_001971_040 Hb_001971_040 Hb_006810_040--Hb_001971_040 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_001971_040--Hb_002028_270 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_000522_160--Hb_006693_010 Hb_000522_160--Hb_005332_030 Hb_000522_160--Hb_159809_040 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_159809_040--Hb_005332_030 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_000977_190 Hb_000977_190 Hb_159809_040--Hb_000977_190 Hb_012092_040 Hb_012092_040 Hb_089140_070--Hb_012092_040 Hb_089140_070--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_089140_070--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_089140_070--Hb_000035_230 Hb_005332_030--Hb_000977_190 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05815 19.3249 267.047 270.154 0.872455 0.152214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 41.3728 32.6234

CAGE analysis