Hb_006816_040

Information

Type -
Description -
Location Contig6816: 30510-32516
Sequence    

Annotation

kegg
ID pmum:103344224
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012088904.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
swissprot
ID Q9FI80
description Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
trembl
ID M5W3D3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025182mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53785: 31270-31437 , PASA_asmbl_53787: 32100-32312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
2 Hb_011900_020 0.0912238156 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
3 Hb_156850_020 0.1073827945 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
4 Hb_000359_070 0.1128650589 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
5 Hb_000360_010 0.122183016 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_012940_020 0.1239461085 - - zeaxanthin epoxidase, putative [Ricinus communis]
7 Hb_007595_050 0.1283708674 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
8 Hb_002835_090 0.1321118971 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
9 Hb_028960_010 0.1352966 - - phosphoglycerate kinase, putative [Ricinus communis]
10 Hb_010080_070 0.1382790042 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
11 Hb_068804_110 0.1400358601 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_106552_030 0.1415349771 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
13 Hb_007595_020 0.1416976417 - - maturase K [Hevea brasiliensis]
14 Hb_003032_090 0.1507571416 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
15 Hb_003944_010 0.1509120591 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
16 Hb_000029_380 0.1522138398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003905_030 0.1522876302 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_005228_060 0.1543485551 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
19 Hb_000038_020 0.1586571045 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
20 Hb_185274_020 0.1589264191 - - Ycf2 (chloroplast) [Andrographis paniculata]

Gene co-expression network

sample Hb_006816_040 Hb_006816_040 Hb_011900_020 Hb_011900_020 Hb_006816_040--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_006816_040--Hb_156850_020 Hb_000359_070 Hb_000359_070 Hb_006816_040--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006816_040--Hb_000360_010 Hb_012940_020 Hb_012940_020 Hb_006816_040--Hb_012940_020 Hb_007595_050 Hb_007595_050 Hb_006816_040--Hb_007595_050 Hb_011900_020--Hb_156850_020 Hb_011900_020--Hb_000359_070 Hb_011900_020--Hb_000360_010 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_000359_070 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_000359_070--Hb_028960_010 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_000360_010--Hb_106552_030 Hb_000360_010--Hb_000359_070 Hb_000360_010--Hb_010080_070 Hb_012940_020--Hb_028960_010 Hb_068804_110 Hb_068804_110 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_106552_030 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_007595_050--Hb_002835_090 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_005228_060 Hb_005228_060 Hb_007595_050--Hb_005228_060 Hb_007595_050--Hb_011900_020 Hb_007595_050--Hb_156850_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0617275 0.586633 1.97898 1.40874 0.53366 0.323591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0674432 0.194577 0.30192 0.161854 11.9637

CAGE analysis