Hb_006816_050

Information

Type -
Description -
Location Contig6816: 33968-39435
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01710g
description hypothetical protein
nr
ID XP_012088893.1
description PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
swissprot
ID Q5ZKQ3
description RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1
trembl
ID A0A067JV15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_050 0.0 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
2 Hb_000291_060 0.0591157615 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
3 Hb_003680_230 0.0624917582 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
4 Hb_007558_120 0.0626349002 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_001143_180 0.066837971 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
6 Hb_154114_010 0.0743190577 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
7 Hb_131646_010 0.074949915 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_002686_250 0.0758550202 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
9 Hb_001195_560 0.0785340466 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
10 Hb_001077_030 0.0799793527 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
11 Hb_004635_050 0.0819245332 - - nucleolar phosphoprotein, putative [Ricinus communis]
12 Hb_004785_100 0.0822026366 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000116_060 0.0830182022 - - plant ubiquilin, putative [Ricinus communis]
14 Hb_003813_040 0.0831565246 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
15 Hb_002042_140 0.0836077038 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
16 Hb_028308_010 0.0836899709 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
17 Hb_007765_080 0.0840870649 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
18 Hb_000594_040 0.0849371502 - - hypothetical protein L484_013922 [Morus notabilis]
19 Hb_010695_020 0.085266663 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
20 Hb_002326_020 0.0853067254 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]

Gene co-expression network

sample Hb_006816_050 Hb_006816_050 Hb_000291_060 Hb_000291_060 Hb_006816_050--Hb_000291_060 Hb_003680_230 Hb_003680_230 Hb_006816_050--Hb_003680_230 Hb_007558_120 Hb_007558_120 Hb_006816_050--Hb_007558_120 Hb_001143_180 Hb_001143_180 Hb_006816_050--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_000291_060--Hb_001143_180 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_000594_040 Hb_000594_040 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_002686_250 Hb_002686_250 Hb_131646_010--Hb_002686_250 Hb_004785_100 Hb_004785_100 Hb_131646_010--Hb_004785_100 Hb_131646_010--Hb_002835_230 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1688 19.7829 16.1956 13.7092 25.216 21.0737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0325 8.83974 9.08467 11.7486 8.41838

CAGE analysis