Hb_006816_090

Information

Type -
Description -
Location Contig6816: 62224-73637
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00990g
description POPTRDRAFT_729421; hypothetical protein
nr
ID XP_012088889.1
description PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
swissprot
ID Q9Y2G0
description Protein EFR3 homolog B OS=Homo sapiens GN=EFR3B PE=1 SV=2
trembl
ID A0A067JKP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23221 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53789: 62195-81084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_090 0.0 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
2 Hb_000136_110 0.0828306501 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
3 Hb_002811_270 0.0841022038 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
4 Hb_000072_090 0.0847333382 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
5 Hb_000207_300 0.0855329145 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
6 Hb_001472_060 0.0922261945 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
7 Hb_000028_520 0.0926961184 - - hypothetical protein L484_025125 [Morus notabilis]
8 Hb_001518_080 0.0928741932 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
9 Hb_079526_040 0.0943158096 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_004109_120 0.0957761825 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
11 Hb_000058_130 0.0962220353 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
12 Hb_007831_010 0.0967898105 - - PREDICTED: oligoribonuclease [Vitis vinifera]
13 Hb_010931_070 0.0972873558 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
14 Hb_002874_180 0.0978159373 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
15 Hb_005000_170 0.0981096201 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
16 Hb_001087_030 0.0996134872 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
17 Hb_012506_030 0.1005522927 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_002326_110 0.1011167892 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_003531_080 0.1016866098 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
20 Hb_000163_090 0.1030767362 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_090 Hb_006816_090 Hb_000136_110 Hb_000136_110 Hb_006816_090--Hb_000136_110 Hb_002811_270 Hb_002811_270 Hb_006816_090--Hb_002811_270 Hb_000072_090 Hb_000072_090 Hb_006816_090--Hb_000072_090 Hb_000207_300 Hb_000207_300 Hb_006816_090--Hb_000207_300 Hb_001472_060 Hb_001472_060 Hb_006816_090--Hb_001472_060 Hb_000028_520 Hb_000028_520 Hb_006816_090--Hb_000028_520 Hb_001584_140 Hb_001584_140 Hb_000136_110--Hb_001584_140 Hb_002498_140 Hb_002498_140 Hb_000136_110--Hb_002498_140 Hb_001005_030 Hb_001005_030 Hb_000136_110--Hb_001005_030 Hb_000373_080 Hb_000373_080 Hb_000136_110--Hb_000373_080 Hb_000136_110--Hb_002811_270 Hb_001269_230 Hb_001269_230 Hb_000136_110--Hb_001269_230 Hb_000214_050 Hb_000214_050 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020 Hb_000071_150 Hb_000071_150 Hb_000072_090--Hb_000071_150 Hb_000072_090--Hb_000136_110 Hb_171334_010 Hb_171334_010 Hb_000072_090--Hb_171334_010 Hb_000072_090--Hb_001472_060 Hb_001014_100 Hb_001014_100 Hb_000072_090--Hb_001014_100 Hb_004109_120 Hb_004109_120 Hb_000207_300--Hb_004109_120 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_001824_080 Hb_001824_080 Hb_000207_300--Hb_001824_080 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_021409_180 Hb_021409_180 Hb_001472_060--Hb_021409_180 Hb_000808_050 Hb_000808_050 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_002157_120 Hb_002157_120 Hb_000028_520--Hb_002157_120 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6025 8.77032 27.9504 19.8387 13.6787 15.2626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5118 7.70156 14.5661 12.9095 18.3312

CAGE analysis