Hb_006816_120

Information

Type -
Description -
Location Contig6816: 93492-94394
Sequence    

Annotation

kegg
ID rcu:RCOM_1435160
description Nicotianamine synthase, putative (EC:2.5.1.43)
nr
ID XP_002512510.1
description Nicotianamine synthase, putative [Ricinus communis]
swissprot
ID Q9XGI7
description Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1
trembl
ID B9RFJ1
description Nicotianamine synthase, putative OS=Ricinus communis GN=RCOM_1435160 PE=4 SV=1
Gene Ontology
ID GO:0030410
description nicotianamine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_120 0.0 - - Nicotianamine synthase, putative [Ricinus communis]
2 Hb_003236_010 0.1035540091 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
3 Hb_006882_010 0.1327603219 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
4 Hb_017711_020 0.1341057602 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
5 Hb_000258_130 0.1398750852 - - -
6 Hb_000152_560 0.1403032918 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
7 Hb_000940_040 0.1406048204 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
8 Hb_000608_340 0.1414195475 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
9 Hb_004567_100 0.1418927278 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
10 Hb_000108_080 0.1447604019 - - PREDICTED: importin-5 [Jatropha curcas]
11 Hb_002217_150 0.146810001 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
12 Hb_009421_030 0.1506755931 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
13 Hb_000270_140 0.1509087826 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
14 Hb_001534_070 0.1511147932 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
15 Hb_003688_200 0.1514440981 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012340_020 0.152861077 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
17 Hb_006002_030 0.1528953213 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_078477_040 0.153319886 - - nuclear movement protein nudc, putative [Ricinus communis]
19 Hb_002814_120 0.1573711877 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
20 Hb_006829_090 0.1574940868 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_120 Hb_006816_120 Hb_003236_010 Hb_003236_010 Hb_006816_120--Hb_003236_010 Hb_006882_010 Hb_006882_010 Hb_006816_120--Hb_006882_010 Hb_017711_020 Hb_017711_020 Hb_006816_120--Hb_017711_020 Hb_000258_130 Hb_000258_130 Hb_006816_120--Hb_000258_130 Hb_000152_560 Hb_000152_560 Hb_006816_120--Hb_000152_560 Hb_000940_040 Hb_000940_040 Hb_006816_120--Hb_000940_040 Hb_002217_150 Hb_002217_150 Hb_003236_010--Hb_002217_150 Hb_000108_080 Hb_000108_080 Hb_003236_010--Hb_000108_080 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_027073_060 Hb_027073_060 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_000270_140 Hb_000270_140 Hb_017711_020--Hb_000270_140 Hb_004567_100 Hb_004567_100 Hb_017711_020--Hb_004567_100 Hb_000003_790 Hb_000003_790 Hb_017711_020--Hb_000003_790 Hb_017711_020--Hb_000940_040 Hb_017711_020--Hb_000152_560 Hb_007441_070 Hb_007441_070 Hb_017711_020--Hb_007441_070 Hb_000922_150 Hb_000922_150 Hb_000258_130--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000258_130--Hb_017438_020 Hb_000258_130--Hb_000940_040 Hb_179511_010 Hb_179511_010 Hb_000258_130--Hb_179511_010 Hb_010068_030 Hb_010068_030 Hb_000258_130--Hb_010068_030 Hb_000422_140 Hb_000422_140 Hb_000258_130--Hb_000422_140 Hb_003097_190 Hb_003097_190 Hb_000152_560--Hb_003097_190 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_000152_560--Hb_010068_030 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_001057_010 Hb_001057_010 Hb_000152_560--Hb_001057_010 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000940_040--Hb_000270_140 Hb_000608_340 Hb_000608_340 Hb_000940_040--Hb_000608_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06886 0.958468 0.137479 0.280294 3.27095 1.72599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.634034 0.362628 0.248493 0.657994 0.460012

CAGE analysis