Hb_006816_130

Information

Type -
Description -
Location Contig6816: 95042-98722
Sequence    

Annotation

kegg
ID rcu:RCOM_1435150
description hypothetical protein
nr
ID XP_012088879.1
description PREDICTED: uncharacterized protein LOC105647421 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23218 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53793: 98428-98825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_130 0.0 - - PREDICTED: uncharacterized protein LOC105647421 [Jatropha curcas]
2 Hb_000343_130 0.0952202931 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
3 Hb_005348_140 0.1034898628 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
4 Hb_010172_050 0.1049516517 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
5 Hb_001975_160 0.1062452174 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002685_010 0.1107268411 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
7 Hb_002218_010 0.112048341 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_000203_160 0.1121256423 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
9 Hb_016901_010 0.1168331263 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
10 Hb_013405_030 0.1174455702 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000453_170 0.118248541 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000063_140 0.1204473928 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
13 Hb_000776_110 0.1215990485 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
14 Hb_001226_040 0.122103509 - - protein with unknown function [Ricinus communis]
15 Hb_126643_020 0.1225600023 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
16 Hb_001617_050 0.1241208827 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
17 Hb_002660_010 0.1256746809 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
18 Hb_000635_220 0.1259028085 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
19 Hb_002518_140 0.1270182166 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
20 Hb_001789_080 0.1288356588 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_130 Hb_006816_130 Hb_000343_130 Hb_000343_130 Hb_006816_130--Hb_000343_130 Hb_005348_140 Hb_005348_140 Hb_006816_130--Hb_005348_140 Hb_010172_050 Hb_010172_050 Hb_006816_130--Hb_010172_050 Hb_001975_160 Hb_001975_160 Hb_006816_130--Hb_001975_160 Hb_002685_010 Hb_002685_010 Hb_006816_130--Hb_002685_010 Hb_002218_010 Hb_002218_010 Hb_006816_130--Hb_002218_010 Hb_000635_220 Hb_000635_220 Hb_000343_130--Hb_000635_220 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_007747_200 Hb_007747_200 Hb_000343_130--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_001507_020 Hb_001507_020 Hb_001975_160--Hb_001507_020 Hb_000317_020 Hb_000317_020 Hb_001975_160--Hb_000317_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_000776_110 Hb_000776_110 Hb_001975_160--Hb_000776_110 Hb_007757_110 Hb_007757_110 Hb_001975_160--Hb_007757_110 Hb_000152_820 Hb_000152_820 Hb_001975_160--Hb_000152_820 Hb_126643_020 Hb_126643_020 Hb_002685_010--Hb_126643_020 Hb_000203_160 Hb_000203_160 Hb_002685_010--Hb_000203_160 Hb_002085_110 Hb_002085_110 Hb_002685_010--Hb_002085_110 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130 Hb_005699_070 Hb_005699_070 Hb_002685_010--Hb_005699_070 Hb_007532_030 Hb_007532_030 Hb_002218_010--Hb_007532_030 Hb_000213_100 Hb_000213_100 Hb_002218_010--Hb_000213_100 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75482 2.17027 0.838035 0.874104 1.79534 2.16998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92327 2.88394 4.93535 2.44191 1.72754

CAGE analysis