Hb_006816_140

Information

Type -
Description -
Location Contig6816: 98742-102197
Sequence    

Annotation

kegg
ID mtr:MTR_4g108060
description Pentatricopeptide repeat-containing protein
nr
ID XP_012088880.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
swissprot
ID O04504
description Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
trembl
ID A0A067JV12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23217 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53793: 98428-98825 , PASA_asmbl_53796: 100067-100401 , PASA_asmbl_53797: 100492-101442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
2 Hb_001158_140 0.0563481521 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
3 Hb_000200_050 0.060040223 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_003266_130 0.0732373853 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
5 Hb_016901_010 0.0791571428 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
6 Hb_000997_400 0.0798377316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
7 Hb_000614_230 0.0820594566 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
8 Hb_000482_010 0.082594729 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
9 Hb_154648_010 0.0850819392 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
10 Hb_004993_050 0.0853688164 - - -
11 Hb_003018_190 0.0878158063 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
12 Hb_000000_250 0.08837794 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
13 Hb_016065_010 0.0885506069 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
14 Hb_004976_030 0.0886342596 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
15 Hb_005488_010 0.0889920309 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004109_190 0.0905264862 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
17 Hb_002686_290 0.0937521224 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
18 Hb_006922_110 0.0952312489 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_000723_080 0.0966716824 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
20 Hb_008695_210 0.0967635078 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_140 Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_006816_140--Hb_001158_140 Hb_000200_050 Hb_000200_050 Hb_006816_140--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006816_140--Hb_003266_130 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_000614_230 Hb_000614_230 Hb_006816_140--Hb_000614_230 Hb_001158_140--Hb_000200_050 Hb_005488_010 Hb_005488_010 Hb_001158_140--Hb_005488_010 Hb_001158_140--Hb_003266_130 Hb_004993_050 Hb_004993_050 Hb_001158_140--Hb_004993_050 Hb_003018_190 Hb_003018_190 Hb_001158_140--Hb_003018_190 Hb_004976_030 Hb_004976_030 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_003996_020 Hb_003996_020 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_003266_130--Hb_000614_230 Hb_003266_130--Hb_005488_010 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73108 5.07241 1.19366 5.16589 9.49998 11.9552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3241 14.3586 19.2777 5.84797 5.31722

CAGE analysis