Hb_006816_160

Information

Type -
Description -
Location Contig6816: 122147-125952
Sequence    

Annotation

kegg
ID rcu:RCOM_1434920
description hypothetical protein
nr
ID XP_002512506.1
description hypothetical protein RCOM_1434920 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53798: 123252-123936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_160 0.0 - - hypothetical protein RCOM_1434920 [Ricinus communis]
2 Hb_009252_120 0.1455902352 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002820_120 0.1612611315 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_162047_010 0.1700910042 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
5 Hb_004767_010 0.1880161764 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
6 Hb_161954_010 0.1913085003 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
7 Hb_000445_010 0.1926169751 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
8 Hb_002393_060 0.1967090991 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
9 Hb_091826_010 0.2048020572 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_000983_180 0.2057801548 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001481_110 0.2115112635 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
12 Hb_008725_190 0.2134588692 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
13 Hb_007304_100 0.2143410421 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
14 Hb_003453_070 0.2171013404 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
15 Hb_005839_070 0.2171110786 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
16 Hb_010374_010 0.2171172571 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_000770_020 0.217343018 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
18 Hb_011045_020 0.217398018 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_006816_540 0.2174434009 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
20 Hb_000302_050 0.2174594035 - - -

Gene co-expression network

sample Hb_006816_160 Hb_006816_160 Hb_009252_120 Hb_009252_120 Hb_006816_160--Hb_009252_120 Hb_002820_120 Hb_002820_120 Hb_006816_160--Hb_002820_120 Hb_162047_010 Hb_162047_010 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_091826_010 Hb_091826_010 Hb_162047_010--Hb_091826_010 Hb_162047_010--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_162047_010--Hb_002393_060 Hb_000983_180 Hb_000983_180 Hb_162047_010--Hb_000983_180 Hb_004089_010 Hb_004089_010 Hb_162047_010--Hb_004089_010 Hb_162047_010--Hb_161954_010 Hb_004767_010--Hb_161954_010 Hb_004767_010--Hb_002393_060 Hb_004767_010--Hb_091826_010 Hb_004767_010--Hb_004089_010 Hb_004767_010--Hb_000983_180 Hb_006816_540 Hb_006816_540 Hb_004767_010--Hb_006816_540 Hb_161954_010--Hb_002393_060 Hb_161954_010--Hb_006816_540 Hb_161954_010--Hb_000983_180 Hb_161954_010--Hb_091826_010 Hb_161954_010--Hb_004089_010 Hb_000445_010--Hb_009252_120 Hb_000445_010--Hb_002820_120 Hb_111881_030 Hb_111881_030 Hb_000445_010--Hb_111881_030 Hb_000445_010--Hb_003910_020 Hb_008725_190 Hb_008725_190 Hb_000445_010--Hb_008725_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384409 0 0.342584 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0301864 0.0237489 0 0.0189516 0

CAGE analysis