Hb_006816_190

Information

Type -
Description -
Location Contig6816: 138248-141883
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01090g
description POPTRDRAFT_729432; calreticulin family protein
nr
ID XP_002318957.1
description calreticulin family protein [Populus trichocarpa]
swissprot
ID P93508
description Calreticulin OS=Ricinus communis PE=2 SV=1
trembl
ID A9PEC9
description Calreticulin family protein OS=Populus trichocarpa GN=POPTR_0013s01090g PE=2 SV=1
Gene Ontology
ID GO:0005788
description calreticulin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53802: 138285-141852 , PASA_asmbl_53804: 140109-141414
cDNA
(Sanger)
(ID:Location)		 026_P08.ab1: 138285-139947 , 031_G11.ab1: 138279-139910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_190 0.0 - - calreticulin family protein [Populus trichocarpa]
2 Hb_004013_030 0.0767801856 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
3 Hb_001623_490 0.0910344599 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
4 Hb_000645_180 0.0945795468 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
5 Hb_000645_070 0.0971861639 - - aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_004907_090 0.0999113974 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003687_080 0.1055100155 - - PREDICTED: casein kinase I-like [Jatropha curcas]
8 Hb_000001_090 0.105617467 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
9 Hb_011381_040 0.1075911864 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
10 Hb_000724_020 0.1082121265 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
11 Hb_000703_290 0.1093594107 - - aldo/keto reductase, putative [Ricinus communis]
12 Hb_000154_050 0.1095971964 - - CMP-sialic acid transporter, putative [Ricinus communis]
13 Hb_006588_160 0.1100181223 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_012779_080 0.1133255353 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
15 Hb_003058_100 0.1142514494 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
16 Hb_000029_400 0.1152030808 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
17 Hb_002837_040 0.1152737549 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_070624_010 0.1154992061 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
19 Hb_001279_090 0.115719612 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
20 Hb_000302_190 0.1167970424 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]

Gene co-expression network

sample Hb_006816_190 Hb_006816_190 Hb_004013_030 Hb_004013_030 Hb_006816_190--Hb_004013_030 Hb_001623_490 Hb_001623_490 Hb_006816_190--Hb_001623_490 Hb_000645_180 Hb_000645_180 Hb_006816_190--Hb_000645_180 Hb_000645_070 Hb_000645_070 Hb_006816_190--Hb_000645_070 Hb_004907_090 Hb_004907_090 Hb_006816_190--Hb_004907_090 Hb_003687_080 Hb_003687_080 Hb_006816_190--Hb_003687_080 Hb_006588_160 Hb_006588_160 Hb_004013_030--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_004013_030--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_004013_030--Hb_001450_020 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_002837_040 Hb_002837_040 Hb_000645_070--Hb_002837_040 Hb_003058_100 Hb_003058_100 Hb_000645_070--Hb_003058_100 Hb_000645_070--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_000645_070--Hb_002749_080 Hb_000903_010 Hb_000903_010 Hb_000645_070--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_000645_070--Hb_002871_140 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_007594_080 Hb_007594_080 Hb_004907_090--Hb_007594_080 Hb_004907_090--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_003687_080--Hb_000327_330 Hb_003687_080--Hb_074399_010 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.8045 76.3747 450.13 276.536 146.058 105.494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.0794 62.8397 44.8293 103.319 249.258

CAGE analysis