Hb_006816_210

Information

Type -
Description -
Location Contig6816: 145806-148231
Sequence    

Annotation

kegg
ID egr:104456708
description GTP-binding protein SAR1A-like
nr
ID XP_010268019.1
description PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID A0A059AXI2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01051 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53808: 145763-148223 , PASA_asmbl_53809: 146653-147125
cDNA
(Sanger)
(ID:Location)		 003_M07.ab1: 145763-147969 , 053_D17.ab1: 145774-147954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_210 0.0 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
2 Hb_015807_040 0.068041454 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
3 Hb_017413_010 0.0836178821 - - -
4 Hb_000331_450 0.0838262834 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
5 Hb_000086_550 0.0843741523 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_006846_060 0.0861490959 - - inositol hexaphosphate kinase, putative [Ricinus communis]
7 Hb_005357_130 0.0864707739 - - hypothetical protein L484_012905 [Morus notabilis]
8 Hb_010042_010 0.0889964066 - - Urease accessory protein ureD, putative [Ricinus communis]
9 Hb_001421_060 0.09022426 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
10 Hb_002016_120 0.0922364921 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
11 Hb_004800_120 0.0934023262 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
12 Hb_000995_040 0.0943833777 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009421_040 0.0980924589 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
14 Hb_017491_060 0.1010710944 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
15 Hb_124755_010 0.1011671015 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
16 Hb_000024_030 0.1013607688 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
17 Hb_004336_050 0.1020544972 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
18 Hb_001833_110 0.102815715 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008544_010 0.1031428846 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_003025_040 0.1036169489 - - PREDICTED: elongin-A [Jatropha curcas]

Gene co-expression network

sample Hb_006816_210 Hb_006816_210 Hb_015807_040 Hb_015807_040 Hb_006816_210--Hb_015807_040 Hb_017413_010 Hb_017413_010 Hb_006816_210--Hb_017413_010 Hb_000331_450 Hb_000331_450 Hb_006816_210--Hb_000331_450 Hb_000086_550 Hb_000086_550 Hb_006816_210--Hb_000086_550 Hb_006846_060 Hb_006846_060 Hb_006816_210--Hb_006846_060 Hb_005357_130 Hb_005357_130 Hb_006816_210--Hb_005357_130 Hb_015807_040--Hb_000331_450 Hb_010042_010 Hb_010042_010 Hb_015807_040--Hb_010042_010 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_012799_160 Hb_012799_160 Hb_006846_060--Hb_012799_160 Hb_001584_190 Hb_001584_190 Hb_006846_060--Hb_001584_190 Hb_003964_100 Hb_003964_100 Hb_006846_060--Hb_003964_100 Hb_000270_370 Hb_000270_370 Hb_006846_060--Hb_000270_370 Hb_009421_040 Hb_009421_040 Hb_005357_130--Hb_009421_040 Hb_003623_050 Hb_003623_050 Hb_005357_130--Hb_003623_050 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.7441 20.5122 45.3037 123.426 112.578 166.849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.487 253.111 145.626 102.616 90.4921

CAGE analysis