Hb_006816_220

Information

Type -
Description -
Location Contig6816: 152153-155107
Sequence    

Annotation

kegg
ID dosa:Os03t0831900-01
description Os03g0831900; Zinc finger, U1-type domain containing protein.
nr
ID XP_012088919.1
description PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
swissprot
ID Q9CPW7
description Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1
trembl
ID A0A067JHR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53810: 152158-154809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_220 0.0 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
2 Hb_003398_130 0.0776908526 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
3 Hb_001234_080 0.093087251 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
4 Hb_000454_050 0.0987740657 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
5 Hb_000109_090 0.1000627081 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
6 Hb_000123_230 0.1007657936 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000251_070 0.1043198254 - - hypothetical protein L484_010641 [Morus notabilis]
8 Hb_002284_090 0.1047392776 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
9 Hb_028227_020 0.1103281641 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
10 Hb_001564_130 0.1124306352 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_010921_010 0.1128646053 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
12 Hb_000714_030 0.1129354582 - - Nucleosome assembly [Gossypium arboreum]
13 Hb_181288_010 0.1139433879 - - rac-GTP binding protein, putative [Ricinus communis]
14 Hb_128048_010 0.1162402417 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
15 Hb_002253_100 0.1163936015 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_001221_320 0.1164748397 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
17 Hb_024682_010 0.1167087261 - - sterol isomerase, putative [Ricinus communis]
18 Hb_008055_040 0.1168112934 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
19 Hb_000933_180 0.1182085756 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
20 Hb_000154_080 0.1192843901 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_220 Hb_006816_220 Hb_003398_130 Hb_003398_130 Hb_006816_220--Hb_003398_130 Hb_001234_080 Hb_001234_080 Hb_006816_220--Hb_001234_080 Hb_000454_050 Hb_000454_050 Hb_006816_220--Hb_000454_050 Hb_000109_090 Hb_000109_090 Hb_006816_220--Hb_000109_090 Hb_000123_230 Hb_000123_230 Hb_006816_220--Hb_000123_230 Hb_000251_070 Hb_000251_070 Hb_006816_220--Hb_000251_070 Hb_003398_130--Hb_000109_090 Hb_010921_010 Hb_010921_010 Hb_003398_130--Hb_010921_010 Hb_028227_020 Hb_028227_020 Hb_003398_130--Hb_028227_020 Hb_002284_090 Hb_002284_090 Hb_003398_130--Hb_002284_090 Hb_005306_170 Hb_005306_170 Hb_003398_130--Hb_005306_170 Hb_001234_080--Hb_028227_020 Hb_000960_060 Hb_000960_060 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_009694_010 Hb_009694_010 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001564_130 Hb_001564_130 Hb_001234_080--Hb_001564_130 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_024682_010 Hb_024682_010 Hb_000454_050--Hb_024682_010 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_004204_120 Hb_004204_120 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_008175_040 Hb_008175_040 Hb_000454_050--Hb_008175_040 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_000109_090--Hb_010921_010 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_182305_020 Hb_182305_020 Hb_000123_230--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_000123_230--Hb_000510_110 Hb_000630_060 Hb_000630_060 Hb_000123_230--Hb_000630_060 Hb_000123_230--Hb_008175_040 Hb_000123_230--Hb_000454_050 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.7699 9.14587 21.2156 19.0324 52.8662 29.1554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6344 62.8218 14.9891 22.3795 18.6393

CAGE analysis