Hb_006816_230

Information

Type -
Description -
Location Contig6816: 155640-160719
Sequence    

Annotation

kegg
ID rcu:RCOM_1434600
description protein disulfide isomerase, putative (EC:5.3.4.1)
nr
ID XP_002512495.1
description protein disulfide isomerase, putative [Ricinus communis]
swissprot
ID P38661
description Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1
trembl
ID B9RFH6
description Protein disulfide isomerase, putative OS=Ricinus communis GN=RCOM_1434600 PE=3 SV=1
Gene Ontology
ID GO:0005783
description probable protein disulfide-isomerase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53811: 155641-160597
cDNA
(Sanger)
(ID:Location)		 041_P04.ab1: 155641-159075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_230 0.0 - - protein disulfide isomerase, putative [Ricinus communis]
2 Hb_000649_060 0.1004615642 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
3 Hb_022092_010 0.1050097104 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
4 Hb_001587_030 0.1107295593 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
5 Hb_005846_050 0.1126435895 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
6 Hb_004096_110 0.1135012717 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
7 Hb_002284_100 0.114650303 - - ribophorin, putative [Ricinus communis]
8 Hb_031527_080 0.1172776591 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_080147_050 0.1187757702 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
10 Hb_000365_200 0.119459818 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
11 Hb_001226_130 0.1213012777 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
12 Hb_020805_180 0.12269817 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_002232_490 0.1263261626 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
14 Hb_016734_020 0.126344195 - - sugar transporter, putative [Ricinus communis]
15 Hb_021576_010 0.1265857878 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_000768_160 0.1288301491 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
17 Hb_002631_130 0.1289881935 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
18 Hb_001369_360 0.1312967621 - - embryo yellow protein, partial [Manihot esculenta]
19 Hb_004837_280 0.1323645114 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
20 Hb_001703_050 0.1326655099 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_230 Hb_006816_230 Hb_000649_060 Hb_000649_060 Hb_006816_230--Hb_000649_060 Hb_022092_010 Hb_022092_010 Hb_006816_230--Hb_022092_010 Hb_001587_030 Hb_001587_030 Hb_006816_230--Hb_001587_030 Hb_005846_050 Hb_005846_050 Hb_006816_230--Hb_005846_050 Hb_004096_110 Hb_004096_110 Hb_006816_230--Hb_004096_110 Hb_002284_100 Hb_002284_100 Hb_006816_230--Hb_002284_100 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000649_060--Hb_020805_180 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_001689_040 Hb_001689_040 Hb_022092_010--Hb_001689_040 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_013358_050 Hb_013358_050 Hb_022092_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_022092_010--Hb_132101_010 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200 Hb_001587_030--Hb_001226_130 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_004837_280 Hb_004837_280 Hb_001587_030--Hb_004837_280 Hb_001587_030--Hb_000890_070 Hb_000406_210 Hb_000406_210 Hb_005846_050--Hb_000406_210 Hb_002552_040 Hb_002552_040 Hb_005846_050--Hb_002552_040 Hb_005846_050--Hb_001587_030 Hb_008289_040 Hb_008289_040 Hb_005846_050--Hb_008289_040 Hb_005846_050--Hb_065500_020 Hb_001504_060 Hb_001504_060 Hb_005846_050--Hb_001504_060 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_002284_100--Hb_002552_040 Hb_002284_100--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_002284_100--Hb_000358_210 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3014 19.0466 35.9084 43.2728 30.493 16.0915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.77071 10.4443 21.5069 70.9188 41.6566

CAGE analysis