Hb_006816_240

Information

Type -
Description -
Location Contig6816: 163399-164714
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01170g
description POPTRDRAFT_570730; hypothetical protein
nr
ID XP_012088922.1
description PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53813: 163933-164658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_240 0.0 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
2 Hb_005116_090 0.1203399713 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000635_020 0.14625975 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000236_210 0.1640599176 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
5 Hb_005843_020 0.1699549807 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_003544_080 0.1800750805 - - Protein HVA22, putative [Ricinus communis]
7 Hb_000997_080 0.1804814248 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
8 Hb_006088_020 0.1830327665 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_002228_120 0.1839181666 - - potassium channel beta, putative [Ricinus communis]
10 Hb_140627_040 0.1849179282 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
11 Hb_000003_610 0.1859489136 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
12 Hb_000083_150 0.1867531387 - - PREDICTED: uncharacterized protein LOC105631732 [Jatropha curcas]
13 Hb_000462_070 0.1872542699 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
14 Hb_001357_220 0.1935334434 - - dopamine beta-monooxygenase, putative [Ricinus communis]
15 Hb_001673_090 0.1943073214 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
16 Hb_000413_120 0.1953085666 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
17 Hb_009662_040 0.1961657271 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
18 Hb_058471_020 0.1981784275 - - PREDICTED: expansin-B3-like [Jatropha curcas]
19 Hb_000398_070 0.2005077336 - - hypothetical protein VITISV_011880 [Vitis vinifera]
20 Hb_034713_010 0.2009080413 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]

Gene co-expression network

sample Hb_006816_240 Hb_006816_240 Hb_005116_090 Hb_005116_090 Hb_006816_240--Hb_005116_090 Hb_000635_020 Hb_000635_020 Hb_006816_240--Hb_000635_020 Hb_000236_210 Hb_000236_210 Hb_006816_240--Hb_000236_210 Hb_005843_020 Hb_005843_020 Hb_006816_240--Hb_005843_020 Hb_003544_080 Hb_003544_080 Hb_006816_240--Hb_003544_080 Hb_000997_080 Hb_000997_080 Hb_006816_240--Hb_000997_080 Hb_005116_090--Hb_000635_020 Hb_034713_010 Hb_034713_010 Hb_005116_090--Hb_034713_010 Hb_002228_120 Hb_002228_120 Hb_005116_090--Hb_002228_120 Hb_140627_040 Hb_140627_040 Hb_005116_090--Hb_140627_040 Hb_015292_020 Hb_015292_020 Hb_005116_090--Hb_015292_020 Hb_000635_020--Hb_000236_210 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_000635_020--Hb_002228_120 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_004690_020 Hb_004690_020 Hb_005843_020--Hb_004690_020 Hb_009662_040 Hb_009662_040 Hb_005843_020--Hb_009662_040 Hb_005843_020--Hb_005116_090 Hb_005843_020--Hb_003893_060 Hb_005843_020--Hb_000635_020 Hb_006153_140 Hb_006153_140 Hb_003544_080--Hb_006153_140 Hb_002783_100 Hb_002783_100 Hb_003544_080--Hb_002783_100 Hb_000317_380 Hb_000317_380 Hb_003544_080--Hb_000317_380 Hb_003680_240 Hb_003680_240 Hb_003544_080--Hb_003680_240 Hb_002686_220 Hb_002686_220 Hb_003544_080--Hb_002686_220 Hb_002067_070 Hb_002067_070 Hb_003544_080--Hb_002067_070 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000011_280 Hb_000011_280 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208176 0.0841089 2.16962 7.66601 0.268867 0.281739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298382 0.058681 0 0.363902 0.853319

CAGE analysis