Hb_006816_260

Information

Type -
Description -
Location Contig6816: 174184-178951
Sequence    

Annotation

kegg
ID tcc:TCM_026744
description RECQ helicase l1
nr
ID KDP23411.1
description hypothetical protein JCGZ_23244 [Jatropha curcas]
swissprot
ID Q9FT74
description ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana GN=RECQL1 PE=2 SV=1
trembl
ID A0A067JHI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23244 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase q-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_260 0.0 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
2 Hb_001623_060 0.1003055011 - - potassium channel beta, putative [Ricinus communis]
3 Hb_007894_170 0.1004156464 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
4 Hb_028396_010 0.1027014463 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
5 Hb_001437_060 0.1032583721 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
6 Hb_004044_040 0.1064142203 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
7 Hb_005054_210 0.1111028435 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
8 Hb_000392_340 0.1114847663 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
9 Hb_003041_050 0.1126623502 - - -
10 Hb_000174_210 0.1127753736 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
11 Hb_004162_210 0.1144872328 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
12 Hb_002681_200 0.1148423536 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
13 Hb_005054_080 0.1155389703 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
14 Hb_002205_090 0.119077107 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
15 Hb_055062_020 0.1201843102 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
16 Hb_000849_130 0.121523097 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
17 Hb_000783_010 0.121995826 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_000317_390 0.1220062576 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_002217_350 0.124507063 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
20 Hb_000510_300 0.1253007761 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006816_260 Hb_006816_260 Hb_001623_060 Hb_001623_060 Hb_006816_260--Hb_001623_060 Hb_007894_170 Hb_007894_170 Hb_006816_260--Hb_007894_170 Hb_028396_010 Hb_028396_010 Hb_006816_260--Hb_028396_010 Hb_001437_060 Hb_001437_060 Hb_006816_260--Hb_001437_060 Hb_004044_040 Hb_004044_040 Hb_006816_260--Hb_004044_040 Hb_005054_210 Hb_005054_210 Hb_006816_260--Hb_005054_210 Hb_186982_040 Hb_186982_040 Hb_001623_060--Hb_186982_040 Hb_000015_030 Hb_000015_030 Hb_001623_060--Hb_000015_030 Hb_000538_120 Hb_000538_120 Hb_001623_060--Hb_000538_120 Hb_000136_350 Hb_000136_350 Hb_001623_060--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_001623_060--Hb_004109_340 Hb_007894_170--Hb_028396_010 Hb_003041_050 Hb_003041_050 Hb_007894_170--Hb_003041_050 Hb_007894_170--Hb_000538_120 Hb_000045_310 Hb_000045_310 Hb_007894_170--Hb_000045_310 Hb_001301_110 Hb_001301_110 Hb_007894_170--Hb_001301_110 Hb_007894_060 Hb_007894_060 Hb_007894_170--Hb_007894_060 Hb_028396_010--Hb_000045_310 Hb_008071_020 Hb_008071_020 Hb_028396_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_028396_010--Hb_001341_150 Hb_001931_010 Hb_001931_010 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080 Hb_024650_070 Hb_024650_070 Hb_001437_060--Hb_024650_070 Hb_000317_390 Hb_000317_390 Hb_001437_060--Hb_000317_390 Hb_004871_080 Hb_004871_080 Hb_001437_060--Hb_004871_080 Hb_001437_060--Hb_005054_210 Hb_000028_350 Hb_000028_350 Hb_001437_060--Hb_000028_350 Hb_008103_050 Hb_008103_050 Hb_004044_040--Hb_008103_050 Hb_004044_040--Hb_007894_170 Hb_000174_210 Hb_000174_210 Hb_004044_040--Hb_000174_210 Hb_076233_040 Hb_076233_040 Hb_004044_040--Hb_076233_040 Hb_000331_180 Hb_000331_180 Hb_004044_040--Hb_000331_180 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_005054_210--Hb_076233_040 Hb_005054_210--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.551319 0.138278 0.778144 1.16385 0.426209 0.402274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0254 1.04292 0.669912 0.822774 0.248802

CAGE analysis