Hb_006816_280

Information

Type -
Description -
Location Contig6816: 179755-184355
Sequence    

Annotation

kegg
ID rcu:RCOM_1434530
description Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, putative (EC:3.6.1.11)
nr
ID XP_012088934.1
description PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
swissprot
ID B2VG72
description Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gppA PE=3 SV=1
trembl
ID A0A067JV42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23247 PE=4 SV=1
Gene Ontology
ID GO:0016787
description guanosine-5 - -diphosphate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53817: 180214-180958 , PASA_asmbl_53818: 182527-183233 , PASA_asmbl_53819: 182585-183345 , PASA_asmbl_53820: 182215-183146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_280 0.0 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
2 Hb_002053_150 0.0634194257 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
3 Hb_027472_070 0.0646980777 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_001998_240 0.0648353983 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
5 Hb_001105_020 0.0856081483 - - expressed protein, putative [Ricinus communis]
6 Hb_000261_480 0.0880600702 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_004208_050 0.0885199806 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
8 Hb_000313_120 0.0895321109 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
9 Hb_002063_020 0.0898223614 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
10 Hb_003058_260 0.089859759 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
11 Hb_007472_090 0.0902722584 - - unnamed protein product [Coffea canephora]
12 Hb_001541_290 0.0912960808 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
13 Hb_002675_130 0.0928352996 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
14 Hb_000352_340 0.0932577983 - - PREDICTED: importin-13 [Jatropha curcas]
15 Hb_000614_240 0.0940974675 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
16 Hb_003228_110 0.0949182503 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
17 Hb_011883_020 0.0951852716 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_004787_050 0.095854183 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
19 Hb_003411_040 0.0981329689 - - unnamed protein product [Coffea canephora]
20 Hb_007441_160 0.0994141979 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_280 Hb_006816_280 Hb_002053_150 Hb_002053_150 Hb_006816_280--Hb_002053_150 Hb_027472_070 Hb_027472_070 Hb_006816_280--Hb_027472_070 Hb_001998_240 Hb_001998_240 Hb_006816_280--Hb_001998_240 Hb_001105_020 Hb_001105_020 Hb_006816_280--Hb_001105_020 Hb_000261_480 Hb_000261_480 Hb_006816_280--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_006816_280--Hb_004208_050 Hb_002053_150--Hb_001998_240 Hb_003228_110 Hb_003228_110 Hb_002053_150--Hb_003228_110 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_003494_230 Hb_003494_230 Hb_002053_150--Hb_003494_230 Hb_001541_290 Hb_001541_290 Hb_002053_150--Hb_001541_290 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_004712_130 Hb_004712_130 Hb_027472_070--Hb_004712_130 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_000614_240 Hb_000614_240 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_001105_020--Hb_000261_480 Hb_000011_060 Hb_000011_060 Hb_001105_020--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_000261_480--Hb_004208_050 Hb_011819_020 Hb_011819_020 Hb_000261_480--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_004208_050--Hb_011819_020 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59792 6.56864 5.16457 4.1019 4.70076 4.45603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55697 3.5832 8.35615 9.85646 7.36205

CAGE analysis