Hb_006816_300

Information

Type -
Description -
Location Contig6816: 194688-199944
Sequence    

Annotation

kegg
ID rcu:RCOM_1434500
description importin alpha, putative
nr
ID XP_012088940.1
description PREDICTED: importin subunit alpha-2 [Jatropha curcas]
swissprot
ID Q9SLX0
description Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2
trembl
ID A0A067JKS1
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_23251 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53824: 194715-199942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_300 0.0 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
2 Hb_007849_020 0.0467131657 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_002105_080 0.0467354302 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_003018_160 0.0602852783 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
5 Hb_000046_450 0.0734886699 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_000227_380 0.0737820388 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
7 Hb_000250_070 0.0746396826 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
8 Hb_000116_280 0.0750139959 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
9 Hb_006588_050 0.0781153257 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
10 Hb_000475_020 0.0784727383 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
11 Hb_042487_010 0.0792873921 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
12 Hb_003866_020 0.0800627747 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000002_440 0.0804827944 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_007904_180 0.0808624987 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
15 Hb_002471_210 0.0812551309 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
16 Hb_000699_250 0.0818374669 - - Poly(rC)-binding protein, putative [Ricinus communis]
17 Hb_147737_010 0.0837874777 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
18 Hb_000813_100 0.0847752968 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
19 Hb_000023_060 0.0853960738 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
20 Hb_141547_010 0.0872991584 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]

Gene co-expression network

sample Hb_006816_300 Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_000227_380 Hb_000227_380 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_002105_080--Hb_000227_380 Hb_002105_080--Hb_000250_070 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_000046_450--Hb_007849_020 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000475_020 Hb_000475_020 Hb_000250_070--Hb_000475_020 Hb_000250_070--Hb_002471_210 Hb_000250_070--Hb_002291_070 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.35 72.3796 17.0705 30.9756 103.109 135.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0813 16.8155 43.6672 45.0688 26.4332

CAGE analysis