Hb_006816_320

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig6816: 204372-205764
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02040g
description zinc finger family protein
nr
ID XP_012088941.1
description PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
swissprot
ID Q8LG10
description GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2
trembl
ID A0A067JV47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23252 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53825: 204378-205766
cDNA
(Sanger)
(ID:Location)		 046_O19.ab1: 204381-205378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_320 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
2 Hb_000041_220 0.0765226016 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
3 Hb_000236_370 0.0915908714 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
4 Hb_012670_140 0.0933133586 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
5 Hb_000684_420 0.0951872768 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_000076_080 0.0953671061 - - PREDICTED: protein MOS2 [Jatropha curcas]
7 Hb_000803_150 0.0960034484 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
8 Hb_004204_200 0.0962080246 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
9 Hb_000284_210 0.098710343 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001214_130 0.0993103723 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
11 Hb_002046_040 0.0997021398 - - PREDICTED: topless-related protein 4 [Malus domestica]
12 Hb_002097_090 0.1007409545 - - Splicing factor 3A subunit, putative [Ricinus communis]
13 Hb_003120_060 0.1009474622 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
14 Hb_009620_040 0.1010382289 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
15 Hb_001829_010 0.1012516271 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
16 Hb_000186_280 0.1020968183 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
17 Hb_001157_060 0.1042544791 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
18 Hb_000009_550 0.1052851033 - - hypothetical protein RCOM_0603640 [Ricinus communis]
19 Hb_010608_010 0.1057475332 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
20 Hb_000175_390 0.1075040847 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_320 Hb_006816_320 Hb_000041_220 Hb_000041_220 Hb_006816_320--Hb_000041_220 Hb_000236_370 Hb_000236_370 Hb_006816_320--Hb_000236_370 Hb_012670_140 Hb_012670_140 Hb_006816_320--Hb_012670_140 Hb_000684_420 Hb_000684_420 Hb_006816_320--Hb_000684_420 Hb_000076_080 Hb_000076_080 Hb_006816_320--Hb_000076_080 Hb_000803_150 Hb_000803_150 Hb_006816_320--Hb_000803_150 Hb_002046_040 Hb_002046_040 Hb_000041_220--Hb_002046_040 Hb_000398_190 Hb_000398_190 Hb_000041_220--Hb_000398_190 Hb_000284_210 Hb_000284_210 Hb_000041_220--Hb_000284_210 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_000645_150 Hb_000645_150 Hb_000236_370--Hb_000645_150 Hb_002097_090 Hb_002097_090 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280 Hb_002205_040 Hb_002205_040 Hb_012670_140--Hb_002205_040 Hb_001014_050 Hb_001014_050 Hb_012670_140--Hb_001014_050 Hb_007108_030 Hb_007108_030 Hb_012670_140--Hb_007108_030 Hb_001141_330 Hb_001141_330 Hb_012670_140--Hb_001141_330 Hb_001789_240 Hb_001789_240 Hb_012670_140--Hb_001789_240 Hb_000684_420--Hb_000076_080 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_002097_090 Hb_000076_080--Hb_002400_180 Hb_000076_080--Hb_000186_280 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7821 20.0671 8.80801 6.26968 38.2105 64.8583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1553 31.6304 20.9456 14.1092 6.70824

CAGE analysis