Hb_006816_350

Information

Type -
Description -
Location Contig6816: 213404-217604
Sequence    

Annotation

kegg
ID rcu:RCOM_1434450
description syntaxin, putative
nr
ID XP_012088945.1
description PREDICTED: syntaxin-43 [Jatropha curcas]
swissprot
ID Q9SUJ1
description Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2
trembl
ID A0A067JHJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23254 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin 41 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53830: 213350-217710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_350 0.0 - - PREDICTED: syntaxin-43 [Jatropha curcas]
2 Hb_000661_290 0.073235565 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
3 Hb_095296_010 0.0735371618 - - PREDICTED: syntaxin-32 [Jatropha curcas]
4 Hb_003020_270 0.0763590348 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
5 Hb_000357_110 0.0784946677 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
6 Hb_000868_110 0.080948521 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
7 Hb_000179_070 0.0811999425 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
8 Hb_004586_140 0.0846473111 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
9 Hb_000000_270 0.0977512504 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
10 Hb_002245_030 0.0985220285 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_002205_110 0.0987392164 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000982_060 0.0990021662 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_000521_320 0.0994900547 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
14 Hb_003893_030 0.1006569165 - - Protein yrdA, putative [Ricinus communis]
15 Hb_002235_210 0.1033247342 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
16 Hb_000696_090 0.1039744151 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
17 Hb_164010_040 0.1048642313 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_005306_190 0.1051759164 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
19 Hb_002872_030 0.1051848761 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_002671_140 0.1063136352 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_006816_350 Hb_006816_350 Hb_000661_290 Hb_000661_290 Hb_006816_350--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_006816_350--Hb_095296_010 Hb_003020_270 Hb_003020_270 Hb_006816_350--Hb_003020_270 Hb_000357_110 Hb_000357_110 Hb_006816_350--Hb_000357_110 Hb_000868_110 Hb_000868_110 Hb_006816_350--Hb_000868_110 Hb_000179_070 Hb_000179_070 Hb_006816_350--Hb_000179_070 Hb_000521_320 Hb_000521_320 Hb_000661_290--Hb_000521_320 Hb_000661_290--Hb_000868_110 Hb_002671_140 Hb_002671_140 Hb_000661_290--Hb_002671_140 Hb_004586_140 Hb_004586_140 Hb_000661_290--Hb_004586_140 Hb_013399_100 Hb_013399_100 Hb_000661_290--Hb_013399_100 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_095296_010--Hb_003020_270 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_003020_270--Hb_000179_070 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_000696_090 Hb_000696_090 Hb_003020_270--Hb_000696_090 Hb_002205_110 Hb_002205_110 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_003389_040 Hb_003389_040 Hb_000357_110--Hb_003389_040 Hb_010997_080 Hb_010997_080 Hb_000357_110--Hb_010997_080 Hb_000357_110--Hb_004586_140 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000868_110--Hb_000869_080 Hb_000179_070--Hb_004586_140 Hb_000179_070--Hb_000661_290 Hb_000179_070--Hb_095296_010 Hb_000179_070--Hb_000696_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.636 15.0969 11.0507 14.7966 10.5973 10.7547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1142 13.3484 11.3368 4.26597 4.97897

CAGE analysis