Hb_006816_360

Information

Type -
Description -
Location Contig6816: 218322-223473
Sequence    

Annotation

kegg
ID rcu:RCOM_1434340
description hypothetical protein
nr
ID XP_012088946.1
description PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
swissprot
ID Q6NM26
description Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1
trembl
ID A0A067JHS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53831: 218321-223487 , PASA_asmbl_53832: 218344-221721 , PASA_asmbl_53835: 221866-222039
cDNA
(Sanger)
(ID:Location)		 014_D11.ab1: 221469-223314 , 015_P09.ab1: 218317-221482 , 025_E21.ab1: 218321-221483 , 044_P01.ab1: 218361-221489 , 046_P05.ab1: 218321-221460 , 049_H18.ab1: 218321-221456 , 052_J18.ab1: 221469-223314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_360 0.0 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
2 Hb_127979_010 0.0897392395 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
3 Hb_003638_140 0.090725768 - - protein binding protein, putative [Ricinus communis]
4 Hb_000176_140 0.0941117727 - - PREDICTED: bystin [Jatropha curcas]
5 Hb_004242_100 0.1014291824 - - RNA binding protein, putative [Ricinus communis]
6 Hb_000700_090 0.1035187971 - - protein with unknown function [Ricinus communis]
7 Hb_026048_090 0.1069375838 - - conserved hypothetical protein [Ricinus communis]
8 Hb_035524_030 0.1073927604 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002391_110 0.10835692 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
10 Hb_000027_270 0.1083651846 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
11 Hb_004072_010 0.1092253195 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
12 Hb_001518_020 0.1100077945 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
13 Hb_001476_100 0.1109085349 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001017_090 0.1114485166 - - -
15 Hb_005488_070 0.1122186639 - - putative cytochrome P450 [Oryza sativa Japonica Group]
16 Hb_001804_060 0.1142970431 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
17 Hb_001952_070 0.1143507156 - - 40S ribosomal protein S6B [Hevea brasiliensis]
18 Hb_003428_110 0.1162611087 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
19 Hb_019613_020 0.1176863026 - - phospholipase C, putative [Ricinus communis]
20 Hb_005245_090 0.1179115779 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_360 Hb_006816_360 Hb_127979_010 Hb_127979_010 Hb_006816_360--Hb_127979_010 Hb_003638_140 Hb_003638_140 Hb_006816_360--Hb_003638_140 Hb_000176_140 Hb_000176_140 Hb_006816_360--Hb_000176_140 Hb_004242_100 Hb_004242_100 Hb_006816_360--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_006816_360--Hb_000700_090 Hb_026048_090 Hb_026048_090 Hb_006816_360--Hb_026048_090 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_002215_050 Hb_002215_050 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_024714_030 Hb_024714_030 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_005941_010 Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_005245_090 Hb_005245_090 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_026048_090--Hb_000057_060 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2473.05 419.993 26.2417 256.986 1613.58 2912.26
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1866.02 1074.96 1396.34 639.571 81.3901

CAGE analysis