Hb_006816_410

Information

Type -
Description -
Location Contig6816: 251842-257985
Sequence    

Annotation

kegg
ID rcu:RCOM_1434190
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012088953.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
swissprot
ID Q9LD55
description Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1
trembl
ID A0A067JHT2
description Eukaryotic translation initiation factor 3 subunit A OS=Jatropha curcas GN=JCGZ_23260 PE=3 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53845: 251783-258044
cDNA
(Sanger)
(ID:Location)		 025_I11.ab1: 256480-258044 , 040_I14.ab1: 252034-252383

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_410 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
2 Hb_002105_080 0.0849954763 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_000023_060 0.0854572263 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
4 Hb_005122_060 0.0862339681 - - unnamed protein product [Vitis vinifera]
5 Hb_001433_190 0.0913153549 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
6 Hb_006588_050 0.0914055534 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_042487_010 0.0920896208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
8 Hb_006816_300 0.0948351658 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
9 Hb_007849_020 0.0949572792 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
10 Hb_007904_180 0.1001238603 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
11 Hb_006501_020 0.1021670217 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
12 Hb_001278_060 0.1025570635 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_000342_090 0.1056852549 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
14 Hb_004037_030 0.1057868003 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
15 Hb_031069_020 0.1071271259 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
16 Hb_000002_440 0.1094755787 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_000365_060 0.1110097937 - - 5'->3' exoribonuclease, putative [Ricinus communis]
18 Hb_007348_030 0.1113373202 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
19 Hb_000227_380 0.1115457656 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_000250_070 0.1125005579 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]

Gene co-expression network

sample Hb_006816_410 Hb_006816_410 Hb_002105_080 Hb_002105_080 Hb_006816_410--Hb_002105_080 Hb_000023_060 Hb_000023_060 Hb_006816_410--Hb_000023_060 Hb_005122_060 Hb_005122_060 Hb_006816_410--Hb_005122_060 Hb_001433_190 Hb_001433_190 Hb_006816_410--Hb_001433_190 Hb_006588_050 Hb_006588_050 Hb_006816_410--Hb_006588_050 Hb_042487_010 Hb_042487_010 Hb_006816_410--Hb_042487_010 Hb_006816_300 Hb_006816_300 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_000997_030 Hb_000997_030 Hb_000023_060--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_000023_060--Hb_007849_020 Hb_000107_040 Hb_000107_040 Hb_000023_060--Hb_000107_040 Hb_000023_060--Hb_000227_380 Hb_000023_060--Hb_042487_010 Hb_005122_060--Hb_006588_050 Hb_005122_060--Hb_002105_080 Hb_005122_060--Hb_006816_300 Hb_000375_370 Hb_000375_370 Hb_005122_060--Hb_000375_370 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001433_190--Hb_002883_010 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_006002_030 Hb_006002_030 Hb_001433_190--Hb_006002_030 Hb_000261_290 Hb_000261_290 Hb_006588_050--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_000699_250 Hb_000699_250 Hb_042487_010--Hb_000699_250 Hb_042487_010--Hb_007849_020 Hb_042487_010--Hb_029142_010 Hb_025012_010 Hb_025012_010 Hb_042487_010--Hb_025012_010 Hb_042487_010--Hb_006816_300 Hb_000340_160 Hb_000340_160 Hb_042487_010--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.921 93.3944 22.7754 27.7626 145.171 224.053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9574 16.9882 38.2021 97.2177 39.0135

CAGE analysis