Hb_006816_420

Information

Type -
Description -
Location Contig6816: 258815-259702
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01340g
description POPTRDRAFT_570746; hypothetical protein
nr
ID KDP23428.1
description hypothetical protein JCGZ_23261 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23261 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_420 0.0 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
2 Hb_000181_210 0.1636201751 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_001922_060 0.1657941792 - - ATP binding protein, putative [Ricinus communis]
4 Hb_026549_050 0.1720071066 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
5 Hb_042509_020 0.1720151409 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
6 Hb_003562_030 0.1743779076 - - -
7 Hb_003142_060 0.1758191207 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_073808_010 0.1769941095 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
9 Hb_080477_080 0.1841194263 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
10 Hb_000834_040 0.1852281046 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
11 Hb_001189_100 0.1924167518 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
12 Hb_000003_020 0.1927086572 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
13 Hb_002170_020 0.194408109 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
14 Hb_004324_030 0.1945430548 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
15 Hb_168180_010 0.1957586621 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000139_140 0.1975385534 - - Acyl-CoA synthetase [Ricinus communis]
17 Hb_002739_040 0.1975666015 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
18 Hb_007416_290 0.1983683101 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
19 Hb_000165_200 0.199720053 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_033234_010 0.2005949734 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]

Gene co-expression network

sample Hb_006816_420 Hb_006816_420 Hb_000181_210 Hb_000181_210 Hb_006816_420--Hb_000181_210 Hb_001922_060 Hb_001922_060 Hb_006816_420--Hb_001922_060 Hb_026549_050 Hb_026549_050 Hb_006816_420--Hb_026549_050 Hb_042509_020 Hb_042509_020 Hb_006816_420--Hb_042509_020 Hb_003562_030 Hb_003562_030 Hb_006816_420--Hb_003562_030 Hb_003142_060 Hb_003142_060 Hb_006816_420--Hb_003142_060 Hb_000181_210--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_000181_210--Hb_042509_020 Hb_004324_030 Hb_004324_030 Hb_000181_210--Hb_004324_030 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_001922_060--Hb_026549_050 Hb_001922_060--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001922_060--Hb_000002_360 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180 Hb_026549_050--Hb_004324_030 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_042509_020--Hb_004324_030 Hb_000834_040 Hb_000834_040 Hb_042509_020--Hb_000834_040 Hb_042509_020--Hb_000832_280 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_003562_030--Hb_000834_040 Hb_001040_200 Hb_001040_200 Hb_003562_030--Hb_001040_200 Hb_188281_050 Hb_188281_050 Hb_003562_030--Hb_188281_050 Hb_000112_050 Hb_000112_050 Hb_003562_030--Hb_000112_050 Hb_003640_010 Hb_003640_010 Hb_003562_030--Hb_003640_010 Hb_001047_170 Hb_001047_170 Hb_003562_030--Hb_001047_170 Hb_003142_060--Hb_000003_020 Hb_003142_060--Hb_000834_040 Hb_003106_230 Hb_003106_230 Hb_003142_060--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05131 0.382477 0.295736 0.744851 0.0257505 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0926235 0.169036 0.78469 0.281596

CAGE analysis