Hb_006816_440

Information

Type -
Description -
Location Contig6816: 276839-280801
Sequence    

Annotation

kegg
ID rcu:RCOM_1434150
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002512471.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q0WRB2
description Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1
trembl
ID B9RFF2
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1434150 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53850: 276896-280985
cDNA
(Sanger)
(ID:Location)		 017_F02.ab1: 276883-279102 , 044_D21.ab1: 276896-279137 , 048_I09.ab1: 276896-279153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_440 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_149683_010 0.0413547035 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
3 Hb_002235_230 0.0733539238 - - latex abundant protein 1 [Hevea brasiliensis]
4 Hb_000184_180 0.081145959 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
5 Hb_000444_030 0.1004224991 - - PREDICTED: expansin-A20 [Jatropha curcas]
6 Hb_001741_080 0.1012493004 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
7 Hb_000052_010 0.1059068743 - - hypothetical protein M569_08416, partial [Genlisea aurea]
8 Hb_003540_230 0.1062632434 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
9 Hb_000005_030 0.108703839 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
10 Hb_000300_400 0.1161937568 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
11 Hb_060668_010 0.1188331712 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
12 Hb_000041_070 0.1195456203 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
13 Hb_004206_030 0.1196159843 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_012799_060 0.1223884065 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_000603_210 0.1230699823 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
16 Hb_000580_170 0.123848452 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
17 Hb_000526_020 0.124530537 - - thioredoxin-like family protein [Hevea brasiliensis]
18 Hb_001514_180 0.1290341812 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
19 Hb_103752_010 0.1300724425 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
20 Hb_005016_130 0.1306468074 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_440 Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_006816_440--Hb_149683_010 Hb_002235_230 Hb_002235_230 Hb_006816_440--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_006816_440--Hb_000184_180 Hb_000444_030 Hb_000444_030 Hb_006816_440--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_006816_440--Hb_001741_080 Hb_000052_010 Hb_000052_010 Hb_006816_440--Hb_000052_010 Hb_149683_010--Hb_002235_230 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_002235_230--Hb_001741_080 Hb_000184_180--Hb_000052_010 Hb_000184_180--Hb_000444_030 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130 Hb_000444_030--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000444_030--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_005016_130 Hb_005016_130 Hb_001741_080--Hb_005016_130 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.461 2.12123 0.575372 10.597 56.538 103.201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
361.552 240.352 168.519 14.3659 1.05596

CAGE analysis