Hb_006816_470

Information

Type -
Description -
Location Contig6816: 291362-295499
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01450g
description POPTRDRAFT_570756; hypothetical protein
nr
ID XP_012088965.1
description PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQ47
description Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 SV=1
trembl
ID A0A067JKT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23271 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105647469 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53852: 291355-292160 , PASA_asmbl_53853: 292721-293751 , PASA_asmbl_53854: 293752-293913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_470 0.0 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
2 Hb_008725_170 0.08640415 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
3 Hb_002876_270 0.1149622322 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
4 Hb_008176_010 0.12169558 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
5 Hb_000019_200 0.127207623 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_006277_010 0.1330789819 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
7 Hb_000406_130 0.1360935839 - - vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_042202_060 0.1373106547 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
9 Hb_002748_020 0.139213526 - - transducin family protein [Populus trichocarpa]
10 Hb_011861_100 0.1421082322 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000950_010 0.1445848456 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
12 Hb_010344_050 0.1455620774 - - Adagio 1 -like protein [Gossypium arboreum]
13 Hb_005601_040 0.1463287537 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
14 Hb_003086_080 0.1473004139 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
15 Hb_011224_100 0.1491584413 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000020_120 0.1502128759 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
17 Hb_000479_140 0.1504161374 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
18 Hb_000027_260 0.1543085679 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
19 Hb_001138_060 0.1567405533 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
20 Hb_000116_130 0.1567953117 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_470 Hb_006816_470 Hb_008725_170 Hb_008725_170 Hb_006816_470--Hb_008725_170 Hb_002876_270 Hb_002876_270 Hb_006816_470--Hb_002876_270 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006277_010 Hb_006277_010 Hb_006816_470--Hb_006277_010 Hb_000406_130 Hb_000406_130 Hb_006816_470--Hb_000406_130 Hb_000020_120 Hb_000020_120 Hb_008725_170--Hb_000020_120 Hb_008725_170--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_008725_170--Hb_007416_060 Hb_000479_140 Hb_000479_140 Hb_008725_170--Hb_000479_140 Hb_003086_080 Hb_003086_080 Hb_008725_170--Hb_003086_080 Hb_000548_070 Hb_000548_070 Hb_002876_270--Hb_000548_070 Hb_002876_270--Hb_006277_010 Hb_003044_080 Hb_003044_080 Hb_002876_270--Hb_003044_080 Hb_021943_090 Hb_021943_090 Hb_002876_270--Hb_021943_090 Hb_006059_010 Hb_006059_010 Hb_002876_270--Hb_006059_010 Hb_008176_010--Hb_000406_130 Hb_006275_070 Hb_006275_070 Hb_008176_010--Hb_006275_070 Hb_000471_110 Hb_000471_110 Hb_008176_010--Hb_000471_110 Hb_000069_210 Hb_000069_210 Hb_008176_010--Hb_000069_210 Hb_001936_130 Hb_001936_130 Hb_008176_010--Hb_001936_130 Hb_001352_020 Hb_001352_020 Hb_008176_010--Hb_001352_020 Hb_002748_020 Hb_002748_020 Hb_000019_200--Hb_002748_020 Hb_001629_030 Hb_001629_030 Hb_000019_200--Hb_001629_030 Hb_165928_040 Hb_165928_040 Hb_000019_200--Hb_165928_040 Hb_000046_540 Hb_000046_540 Hb_000019_200--Hb_000046_540 Hb_000189_550 Hb_000189_550 Hb_000019_200--Hb_000189_550 Hb_000019_200--Hb_006277_010 Hb_004046_030 Hb_004046_030 Hb_006277_010--Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_006277_010--Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_000185_220 Hb_000185_220 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040 Hb_000406_130--Hb_000471_110 Hb_000406_130--Hb_001352_020 Hb_000406_130--Hb_000479_140 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73661 1.40899 3.01002 5.52939 1.65123 2.39131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01225 3.29667 10.0336 5.23928 9.14446

CAGE analysis