Hb_006816_500

Information

Type -
Description -
Location Contig6816: 325183-327571
Sequence    

Annotation

kegg
ID rcu:RCOM_1433920
description RNA binding protein, putative
nr
ID XP_012088973.1
description PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_500 0.0 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
2 Hb_000002_330 0.0887927413 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
3 Hb_000141_060 0.0919097119 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
4 Hb_143766_090 0.093582627 - - 60S ribosomal protein L31B [Hevea brasiliensis]
5 Hb_010128_130 0.0946290459 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
6 Hb_000322_050 0.0967521543 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
7 Hb_003544_090 0.0974766706 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
8 Hb_171900_100 0.0986084552 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
9 Hb_003752_080 0.1003003409 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
10 Hb_002272_250 0.1033415346 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001741_140 0.1045215082 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_001221_230 0.1045494897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000976_270 0.1055611956 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
14 Hb_000209_090 0.1057552648 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_143629_010 0.1062155309 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_005527_050 0.1109755191 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
17 Hb_000236_320 0.1124225382 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
18 Hb_000236_370 0.1125836416 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
19 Hb_010810_050 0.1126626851 - - hypothetical protein [Cleome spinosa]
20 Hb_001369_650 0.1129997041 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]

Gene co-expression network

sample Hb_006816_500 Hb_006816_500 Hb_000002_330 Hb_000002_330 Hb_006816_500--Hb_000002_330 Hb_000141_060 Hb_000141_060 Hb_006816_500--Hb_000141_060 Hb_143766_090 Hb_143766_090 Hb_006816_500--Hb_143766_090 Hb_010128_130 Hb_010128_130 Hb_006816_500--Hb_010128_130 Hb_000322_050 Hb_000322_050 Hb_006816_500--Hb_000322_050 Hb_003544_090 Hb_003544_090 Hb_006816_500--Hb_003544_090 Hb_000236_320 Hb_000236_320 Hb_000002_330--Hb_000236_320 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000645_150 Hb_000645_150 Hb_000002_330--Hb_000645_150 Hb_000666_110 Hb_000666_110 Hb_000141_060--Hb_000666_110 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_019962_030 Hb_019962_030 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_011794_090 Hb_011794_090 Hb_000141_060--Hb_011794_090 Hb_000141_060--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_000209_090 Hb_000209_090 Hb_003544_090--Hb_000209_090 Hb_000003_090 Hb_000003_090 Hb_003544_090--Hb_000003_090 Hb_003544_090--Hb_010128_130 Hb_003544_090--Hb_001741_140 Hb_004204_200 Hb_004204_200 Hb_003544_090--Hb_004204_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1194 3.383 3.26322 1.33584 10.5604 11.7691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.70395 10.045 3.52473 5.99393 1.39412

CAGE analysis