Hb_006824_050

Information

Type -
Description -
Location Contig6824: 69125-71068
Sequence    

Annotation

kegg
ID pmum:103335177
description pentatricopeptide repeat-containing protein At1g08070-like
nr
ID XP_012093072.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
swissprot
ID O82380
description Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1
trembl
ID A0A067LJI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16282 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at1g08070-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53876: 70604-70724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006824_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
2 Hb_000318_330 0.0774147082 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
3 Hb_001959_190 0.0961647976 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
4 Hb_002585_020 0.0980442885 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
5 Hb_000367_260 0.0985737986 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
6 Hb_002878_020 0.1030954515 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_009803_050 0.1032453547 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
8 Hb_004607_030 0.1037148887 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
9 Hb_000041_100 0.1049479213 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
10 Hb_003847_030 0.1062444204 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
11 Hb_001633_210 0.1076402121 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
12 Hb_004846_070 0.1078350428 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
13 Hb_000603_080 0.108710678 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
14 Hb_086639_010 0.1097615089 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000206_240 0.1114328039 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000614_250 0.1125739668 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
17 Hb_001014_030 0.1130541098 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000748_130 0.1140274333 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
19 Hb_148113_010 0.1140894422 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
20 Hb_000471_110 0.1151594395 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006824_050 Hb_006824_050 Hb_000318_330 Hb_000318_330 Hb_006824_050--Hb_000318_330 Hb_001959_190 Hb_001959_190 Hb_006824_050--Hb_001959_190 Hb_002585_020 Hb_002585_020 Hb_006824_050--Hb_002585_020 Hb_000367_260 Hb_000367_260 Hb_006824_050--Hb_000367_260 Hb_002878_020 Hb_002878_020 Hb_006824_050--Hb_002878_020 Hb_009803_050 Hb_009803_050 Hb_006824_050--Hb_009803_050 Hb_025557_030 Hb_025557_030 Hb_000318_330--Hb_025557_030 Hb_004607_030 Hb_004607_030 Hb_000318_330--Hb_004607_030 Hb_004846_070 Hb_004846_070 Hb_000318_330--Hb_004846_070 Hb_001969_090 Hb_001969_090 Hb_000318_330--Hb_001969_090 Hb_000318_330--Hb_002878_020 Hb_020805_130 Hb_020805_130 Hb_001959_190--Hb_020805_130 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_001959_190--Hb_009803_050 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_000120_460 Hb_000120_460 Hb_002585_020--Hb_000120_460 Hb_002435_120 Hb_002435_120 Hb_002585_020--Hb_002435_120 Hb_002585_020--Hb_004846_070 Hb_000041_100 Hb_000041_100 Hb_002585_020--Hb_000041_100 Hb_002307_170 Hb_002307_170 Hb_002585_020--Hb_002307_170 Hb_001504_330 Hb_001504_330 Hb_000367_260--Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_000367_260--Hb_000603_080 Hb_031910_020 Hb_031910_020 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210 Hb_009803_050--Hb_000603_080 Hb_009803_050--Hb_020805_130 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.872334 1.23935 0.358887 1.09777 0.451733 1.01136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722046 1.92428 2.2919 1.23983 1.00614

CAGE analysis