Hb_006827_020

Information

Type -
Description -
Location Contig6827: 69540-77153
Sequence    

Annotation

kegg
ID rcu:RCOM_1313180
description hypothetical protein
nr
ID XP_002518904.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313180 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tetratricopeptide repeat-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53882: 50743-77075 , PASA_asmbl_53883: 75190-75555 , PASA_asmbl_53884: 75721-75986
cDNA
(Sanger)
(ID:Location)		 053_D24.ab1: 50743-72016

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006827_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007317_110 0.0422021677 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
3 Hb_000808_270 0.0475090266 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
4 Hb_007059_010 0.0546789217 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
5 Hb_000538_100 0.0550112849 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000011_200 0.05534198 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
7 Hb_003813_130 0.0581403432 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
8 Hb_000630_050 0.0610738054 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001493_030 0.0627104439 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
10 Hb_000085_160 0.0628121053 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
11 Hb_103012_010 0.0650466692 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_001960_020 0.0671100925 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
13 Hb_000193_190 0.0672450022 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
14 Hb_000123_210 0.0684501076 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
15 Hb_001143_160 0.0693006165 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
16 Hb_001946_010 0.0695462402 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_143629_210 0.0729532518 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
18 Hb_066182_010 0.073001073 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
19 Hb_002078_020 0.0735509833 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
20 Hb_003952_070 0.0745581894 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006827_020 Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_000011_200--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_003813_130--Hb_011930_160 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_004055_030 Hb_004055_030 Hb_003813_130--Hb_004055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1374 4.87842 4.60254 5.72328 9.83493 10.1466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98472 6.37849 7.35782 7.16414 2.98401

CAGE analysis