Hb_006827_030

Information

Type -
Description -
Location Contig6827: 82789-96640
Sequence    

Annotation

kegg
ID rcu:RCOM_1313170
description oligopeptide transporter, putative
nr
ID XP_002518903.1
description oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q6R3L0
description Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2
trembl
ID B9RYT4
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1313170 PE=4 SV=1
Gene Ontology
ID GO:0005886
description metal-nicotianamine transporter ysl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53885: 82790-96627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006827_030 0.0 - - oligopeptide transporter, putative [Ricinus communis]
2 Hb_001579_060 0.0699622034 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_171168_010 0.0817943524 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_007035_010 0.0845357437 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
5 Hb_000049_170 0.090198023 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007113_020 0.091128555 - - -
7 Hb_001883_010 0.1009473903 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_002615_080 0.1021913918 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
9 Hb_002155_020 0.1036369977 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
10 Hb_001836_010 0.1039858231 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
11 Hb_003680_010 0.1051513078 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_032695_010 0.106563802 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
13 Hb_001866_100 0.1069972784 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
14 Hb_000025_590 0.1103936272 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
15 Hb_000987_020 0.111028366 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
16 Hb_000680_130 0.1122989629 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_007205_020 0.1158457565 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
18 Hb_000694_050 0.1158631499 - - Nuclease PA3, putative [Ricinus communis]
19 Hb_006588_020 0.1158656959 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_000147_020 0.1222941821 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]

Gene co-expression network

sample Hb_006827_030 Hb_006827_030 Hb_001579_060 Hb_001579_060 Hb_006827_030--Hb_001579_060 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_000987_020 Hb_000987_020 Hb_001579_060--Hb_000987_020 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_171168_010--Hb_007113_020 Hb_171168_010--Hb_001579_060 Hb_002155_020 Hb_002155_020 Hb_171168_010--Hb_002155_020 Hb_002030_090 Hb_002030_090 Hb_171168_010--Hb_002030_090 Hb_171168_010--Hb_000049_170 Hb_001866_100 Hb_001866_100 Hb_007035_010--Hb_001866_100 Hb_003680_010 Hb_003680_010 Hb_007035_010--Hb_003680_010 Hb_006588_020 Hb_006588_020 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_007035_010--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_000049_170--Hb_002845_020 Hb_000049_170--Hb_006588_020 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360 Hb_000261_370 Hb_000261_370 Hb_007113_020--Hb_000261_370 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_003849_030 Hb_003849_030 Hb_007113_020--Hb_003849_030 Hb_127661_010 Hb_127661_010 Hb_007113_020--Hb_127661_010 Hb_032695_010 Hb_032695_010 Hb_001883_010--Hb_032695_010 Hb_001883_010--Hb_000694_050 Hb_001883_010--Hb_000680_130 Hb_000025_590 Hb_000025_590 Hb_001883_010--Hb_000025_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0336257 30.3932 40.8735 19.7489 0 0.0201755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0852331 0.0268278 0 24.7846 71.7054

CAGE analysis